Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0265 ATGATCCAGGCGAAGGAGTTGAGAGAGGTTTTGCATTTCGTATTCTCACTACAATTCCTAAGAATGGCTCTGTTCTGGACGCTCTCACTCATCATCTCTTACTTACATCTCTTCATTCAAAGATTTCCATTTTCTCGGAAATCCAACTCCTATCCGCGCTGTCCTCCGGCAAACACTGCTACTTTCAGGCCTCTCTGCATCATCACCGGCGCTACATCTGGTTTGGGTAAGGCGGCTGCATACGCACTTTCAAAGGAAGGCTTCTACGTTGTTCTCGTTGGGAGGTCATCTCATTTATTATCAAAGACTATGGTAGAAATCAAGGAAAAGAATAAAAATGCTCATCTCAAAGGTTTTCAGGTAGACTTATCATCCTTCCACTCAATCCTGAAGTTCAAGGGCTCCCTTGAGCAGTGGCTTGCAGATTCAAATATGCATTCTTCTATCCAACTTCTGATAAACAATGCGGGGATATTGGCTACATCTTGTAGACTCACAACAGAAGGCTGTGATCAGATGATGGCAACAAATTACATGGGTGCTTTCTCTTTGACCAAACTTCTATTACCACTTCTAAGAAGCAGCCCTGTTCCATCAAGGATAGTCAACGTTTCATCCTTTACACATCTAAATGTATTTGATATGCAGGTTGACGAGGGTACTATTACTGGGAAGTGTTTCTCAAGGCCAAAACAGTATCCATGTGCTCATATTTATGAGTATTCTAAATTATGCTTACTGCTGTTCGCCTATGAGCTTCATCGACAACTTGGTTGTATGCACAACTCTCGCCACGTTTCTGTCATTGCTGTGGACCCTGGAGCAGTGGAAACCAACATCATGCGAGAAGTTCCTTCATGTATTTCCCATATGGCATTTATGGTCTTGAAACTTCTATTCCTCCTGCAGTCACCTGAAAATGGAGTGAGCTCTATTCTTGATGCTGCCCTTGCTCCTCCAGTAAGTTTTCCTTTAATAATTTTTAACTGCTTCATGTGA 999 0.4244 MIQAKELREVLHFVFSLQFLRMALFWTLSLIISYLHLFIQRFPFSRKSNSYPRCPPANTATFRPLCIITGATSGLGKAAAYALSKEGFYVVLVGRSSHLLSKTMVEIKEKNKNAHLKGFQVDLSSFHSILKFKGSLEQWLADSNMHSSIQLLINNAGILATSCRLTTEGCDQMMATNYMGAFSLTKLLLPLLRSSPVPSRIVNVSSFTHLNVFDMQVDEGTITGKCFSRPKQYPCAHIYEYSKLCLLLFAYELHRQLGCMHNSRHVSVIAVDPGAVETNIMREVPSCISHMAFMVLKLLFLLQSPENGVSSILDAALAPPVSFPLIIFNCFM* 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0265 332 Gene3D - 63 323 - -
Vvi4g0265 332 PRINTS Glucose/ribitol dehydrogenase family signature 147 158 IPR002347 -
Vvi4g0265 332 PRINTS Glucose/ribitol dehydrogenase family signature 65 82 IPR002347 -
Vvi4g0265 332 PRINTS Glucose/ribitol dehydrogenase family signature 264 281 IPR002347 -
Vvi4g0265 332 PRINTS Glucose/ribitol dehydrogenase family signature 239 258 IPR002347 -
Vvi4g0265 332 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 66 320 IPR036291 -
Vvi4g0265 332 PANTHER RETINOL DEHYDROGENASE 62 320 - -
Vvi4g0265 332 Pfam short chain dehydrogenase 67 209 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0265 Vvi-Chr4 2317071 2324873 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0265 65 210 Acyl Lipid Metabolism Gene Families AT1G62610 28.667 1.15e-10 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0265 - - vvi:100255932 627.861