Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0260 ATGGGATGGGGAAACATCTACAGACGGCGTGTGAAAGTATTCACAGTAGCTTTTATAATCTACCTGGATTATAAGGCTTTACAGCAAAGAGAGAAATGGAGTAGCAAATCTAAAAAAGCCGCTCTATGGGAAAGGGCTCATGAACGCAATGCTAAACGTGTGCTTAATTTGATAGTAGAGTTGGAAGGTTTGTGGGTAAAACTCGGACAGTACTTATCTACACGTGCAGATGTGCTTCCTGAGGCCTATATATCCCTTCTCAAGCAGTTACAAGATTCTCTTCCTCCTCGGCCTTTGAAAGAGGTATGTCGGACTATAGAGAAGGAGTTAGGGAAATCCATGGATGATCTATTCTCGAGTTTTGTTGATGCTCCTCTGGCGACAGCGTCAATAGCTCAAGTTCATCGTGCAACTCTGAGAAGTGGGGAAGATGTGGTTGTTAAAGTTCAACATGAGGGCATCAAGACAGTCATATTGGAGGACTTAAAGAATGCAAAGTCAATAGCTGACTGGATAGCATGGGCAGAACCACAATATGACTTCAACCCTATGATTGATGAATGGTGCAGAGAAGCACCTAAAGAACTTGATTTTGATCATGAAGCTGAAAACACTAGAAAAGTCTCCAGAAATCTAGGCTGCAAAAACAAGAATGATGTCATGCCTGGCAATCAAGTGGATGTGTTGATTCCAGAAATTATTCAGTCAACTGAAAAAGTCCTCATTTTAGAGTATATGGATGGGGTTCGTTTGAATGACTGTGAATCACTGAAAGCTTTTGGTATTGACAAACAAAAGCTTGTTGAAGAAATAACTCGTGCATATGCCCACCAGATTTACGTTGATGGATTTTTTAATGGTGACCCCCACCCTGGAAATTTTCTTGTCAGCAAGGAACCTCCACATCGTCCAGTTTTGCTTGACTTTGGGCTTACAAAGTCACTATCAAGCTCTATGAAACAAGCACTAGCGAAATTGTTTCTGGCATCTGCAGAGGGGGATCATGTGGCTCTTTTGTCTGCCTTATCAGAAATGGGACTTAGGTTGCGCCTTGACCTGCCAGATCAGGCGATGGAAGTAGCAACTGTATTTTTCCGTTCTTCAACACCAGCTAGTGAAGCTCTTGAAAACATGAGATCTTTGTCTAAGCAACGAACGAAGAACATGAAAGTCATACAGGAAAAGATGAAACTCAATAAAAAAGAAGTTAAACGCTTTAATCCCGTGGATGCATTTCCAGGGGATATTGTGATATTCGCACGGGTTCTTAATCTTCTTAGAGGGCTTTCAACCATAATGGATGTTCGCATCAGCTATTTAGATATCATGAGACCATTTGCTGAATCTGTTCTACAAGGATACATTAACAAGGGACCAGCAGTGAATTCACAATGGATATATGATACACCTGTCCATTCGGATGTAGAGACAAAGCTAAGGCGCCTCCTAGTTGAGCTGGGGAATGATGATAAAATACTGGGAATTCAGGTATGTGCCTACAAAGATGGGGAGGTTATTATTGATACTGCTGCTGGAGTGCTTGGAAGATATGATCCTCGTCCAGTTCAACCTGATAGCCTATTTCCTGTTTTCTCCGTAACAAAGGGTATTACAGCAGGAATGATACATTGGCTGGTTGACAAAGGGAAACTGAAGCTTGGGGAGAGTATTGCAAATATTTGGCCAGAATTTGGATCAAATAAAAAGGAGCTAATAAAGGTCCATCATGTGCTTACACATACATCTGGTTTGCAAAACGCCTTGGGTGATATTTCAAGAGAAAATCCTTTGTTGATGTGCGAGTGGGATGAATGTTTAAATCGCATTGCTATGTCAGTCCCTGAGACTGAACCTGGTCATGAGCAGTTATATCATTATTTATCTTTTGGCTGGCTGTGTGGTGGAATTATTGAGCATGCTTCTGGGAAGAAATTCCAGGAGATACTAGAAGAAGCATTTATTCGCCCCCTCCAGATTGAAGGCGAGCTATATGTTGGAATTCCTCCAGGTGTGGAATCTCGACTTGCAACTCTCACAGTGGATACTGATGATGTGCGCAAGTTGTCAGTGTACAGCAATCGTCCTGACCTACCCGTAAGTTTCACGAGCAACATCTCTGAGCTTGTGACCGTTCTTCCTGCTCTATTCAACACACTCAATATCCGTCGTTCCATCATACCTTCTGCTAATGGACATTGCTCAGCCCGTGCACTGGCTCGCTACTATGCAACCCTAGCTGACGGTGGCATTCTGCCACCACCACATTCCACTTCGTCCAAGCCGCCACTTGGCAGCCACCCCCACATTCCATCATTCCCTTCCCAGAAAACCTCCAAGAAGCAGAAAGGTGGCAAAAGTAAGGACGTAGCTGCTGCTTCAAACAAAACCAATATTCACGAACAAAACACAGATGATGGTAGTAGAAGTTCCAAGGATAGTTGTTACAATAGAAAGGCTAGGTGTGATAATCACGGTAGGTTTCCCCATGATAGTGGTAGTAGTAGTGAGAGTACCGTTAGCAACAATGGGCATAGAATTGGCAGCACTGAAAATGGTGATGACTCTCCAAAGAGTGACACTAAGATTTTTAGCAACCCCAGAATCCATGATGCATTCTTGGGTGTAGGCGAATACGAGAATTATGGTTTCCCAAGTGGGAAATTTGGTCTAGGGTTCAAGAGTTGTAGCTCGAAGGATGGGACTTTGTTAGGCTTTGGACACTCAGGGATGGGTGGATCTACAGGCTACTGTGACATAAATAACAAGTTTGCTATTGCTGTGACCCTGAACAAGATGTCGCTCGGGGGTGTGACTGGAAAAATAATTCAATTCATTTGTTCAGAGCTGAACTTGCCTGTCCCAGAGGATTACTCGAGATTCAGCGGGAGCGAAAAACCTGAAGAGCAGTCAAACGTATGGAGGCCTCTTATTAATTGA 2937 0.4317 MGWGNIYRRRVKVFTVAFIIYLDYKALQQREKWSSKSKKAALWERAHERNAKRVLNLIVELEGLWVKLGQYLSTRADVLPEAYISLLKQLQDSLPPRPLKEVCRTIEKELGKSMDDLFSSFVDAPLATASIAQVHRATLRSGEDVVVKVQHEGIKTVILEDLKNAKSIADWIAWAEPQYDFNPMIDEWCREAPKELDFDHEAENTRKVSRNLGCKNKNDVMPGNQVDVLIPEIIQSTEKVLILEYMDGVRLNDCESLKAFGIDKQKLVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKEPPHRPVLLDFGLTKSLSSSMKQALAKLFLASAEGDHVALLSALSEMGLRLRLDLPDQAMEVATVFFRSSTPASEALENMRSLSKQRTKNMKVIQEKMKLNKKEVKRFNPVDAFPGDIVIFARVLNLLRGLSTIMDVRISYLDIMRPFAESVLQGYINKGPAVNSQWIYDTPVHSDVETKLRRLLVELGNDDKILGIQVCAYKDGEVIIDTAAGVLGRYDPRPVQPDSLFPVFSVTKGITAGMIHWLVDKGKLKLGESIANIWPEFGSNKKELIKVHHVLTHTSGLQNALGDISRENPLLMCEWDECLNRIAMSVPETEPGHEQLYHYLSFGWLCGGIIEHASGKKFQEILEEAFIRPLQIEGELYVGIPPGVESRLATLTVDTDDVRKLSVYSNRPDLPVSFTSNISELVTVLPALFNTLNIRRSIIPSANGHCSARALARYYATLADGGILPPPHSTSSKPPLGSHPHIPSFPSQKTSKKQKGGKSKDVAAASNKTNIHEQNTDDGSRSSKDSCYNRKARCDNHGRFPHDSGSSSESTVSNNGHRIGSTENGDDSPKSDTKIFSNPRIHDAFLGVGEYENYGFPSGKFGLGFKSCSSKDGTLLGFGHSGMGGSTGYCDINNKFAIAVTLNKMSLGGVTGKIIQFICSELNLPVPEDYSRFSGSEKPEEQSNVWRPLIN* 979
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0260 978 SUPERFAMILY Protein kinase-like (PK-like) 91 313 IPR011009 -
Vvi4g0260 978 SUPERFAMILY beta-lactamase/transpeptidase-like 474 754 IPR012338 -
Vvi4g0260 978 Gene3D - 475 777 IPR012338 -
Vvi4g0260 978 MobiDBLite consensus disorder prediction 957 978 - -
Vvi4g0260 978 MobiDBLite consensus disorder prediction 752 862 - -
Vvi4g0260 978 Pfam Beta-lactamase 480 756 IPR001466 -
Vvi4g0260 978 PANTHER ABC1 FAMILY PROTEIN 9 668 - -
Vvi4g0260 978 MobiDBLite consensus disorder prediction 801 829 - -
Vvi4g0260 978 Pfam ABC1 atypical kinase-like domain 89 339 IPR004147 -
Vvi4g0260 978 CDD ABC1_ADCK3-like 89 342 - -
Vvi4g0260 978 MobiDBLite consensus disorder prediction 830 849 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0260 Vvi-Chr4 2272173 2281637 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0260 K08869 - vvi:100242392 1918.28