Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0255 ATGGCAGCAATGGAAGCAGTACTGTATCATCTGAGGCTGTACTTAGTAGACAGCAGTGTCATACCGGCATTCAGCGAAAAGTGCAAGACTGGTATCTCGCAGGCCGATCAAAGCCTCTCATTGCATCATTCTACCCCTGCCCATCAGCCTGGAGCTGATTCCATGTATTCCCTTCCCTTGTTGGGGCATGAAGCCAAGGTGGAGGCAAAAATCCCTAGCTCTTATTCCTCATTGTATGCCCAAGAGCCTGTGCTTGGTGGATTACCCTTGAGGAGGTCTGACCGTGCCGCTGCGCCTGCTCAGAGAACGGAAAGAATAAAAATCCCTTTCTCAGCTGCCAAGGATATCATTGGCATTGCTGGCGAAACTATTGACCACATCCGTCGGACGAGTGGATCCATCATCACAATAGAAGAGGATAGAAGCCTACCTGACGAGTACATTCTAGAAGTGAGGGGCACAACCTCACAGCTCCAAACAGCTCAACAGCTCATTGAGGAGCTTCTTGAGAGCCATCACCAGCCAGGAAGGGAGGGAAGTATCTATGACAACATGGATGCTGGATTAAGTTCCAACTCCCAGTTTGCACTACCCACCCACCCTCTTTCTCCCTTCTCACCCCAATATCGCTTCCCATCTCAACCATCAGGGGAAAACGGAATTTCAAGTGCAGGTGAGCACACTGGTTCGAGGTTTTGGAAGGGTGATCAGATTTCAGAATAA 723 0.4965 MAAMEAVLYHLRLYLVDSSVIPAFSEKCKTGISQADQSLSLHHSTPAHQPGADSMYSLPLLGHEAKVEAKIPSSYSSLYAQEPVLGGLPLRRSDRAAAPAQRTERIKIPFSAAKDIIGIAGETIDHIRRTSGSIITIEEDRSLPDEYILEVRGTTSQLQTAQQLIEELLESHHQPGREGSIYDNMDAGLSSNSQFALPTHPLSPFSPQYRFPSQPSGENGISSAGEHTGSRFWKGDQISE* 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0255 240 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 99 177 IPR036612 GO:0003723
Vvi4g0255 240 SMART kh_6 100 170 IPR004087 GO:0003676
Vvi4g0255 240 MobiDBLite consensus disorder prediction 192 240 - -
Vvi4g0255 240 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 42 190 - -
Vvi4g0255 240 Gene3D K Homology domain, type 1 92 176 IPR036612 GO:0003723
Vvi4g0255 240 ProSiteProfiles Type-1 KH domain profile. 101 165 - -
Vvi4g0255 240 MobiDBLite consensus disorder prediction 192 226 - -
Vvi4g0255 240 Pfam KH domain 103 167 IPR004088 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0255 Vvi-Chr4 2238065 2239926 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0255 K21444 - vvi:100242157 477.633