Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0252 ATGGCCGTTTTGAGTTCCTCACTCTCAGCATTCTTCATCAAAAAACTCGTACACCCATCAAAACCCACTTCAATTTTCTCACATTATTCAACTCACCCGCATCTCTCTGCCATGAATTTCCCTCCAAGATCCAAACCCGGTTCAGCAGCTTCTGCAACAACCTCTGAGGTTCCTGACCTGCCCTCCAATGAAATGGGCAAGATTGTAGAGCAGACTTTTCAAAGGTACTCATCTTCTGATGAGGCCAAGAGGAATGGTAGTGGGGTTGCCATTGTTTGGTTCAGAAATGATCTGAGGGTTCTGGATAATGAGGCTTTGGTCAAAGCTTGGGCTTCTTCTCAGGCTGTGTTGCCTGTGTACTGTGTTGATCCAAGGCTTTTTGGCACCACCCATTACTTTGGGTTCCCTAAAACTGGAGCCTTGAGGGCACAATTTCTCATAGAATGCTTGGCTGACTTGAAAAGGAATCTCATGAACCGAGGGCTGAACTTGCTCATTCAACATGGGAAACCCGAGGAAATTCTCCCTTCTCTTGCAAAAACCTTTGAAGCCCACACGGTGTATGCACATAAAGAAACTTGTAGTGAGGAGCTGAATGTCGAGCGACTGGTTAGAAATGGTCTGCGACAAGTGGTGTTGCCACCATCTCCTGGGCAATCCACCAGCCTGAGTTCCTCAAACCACCCAAAATTACAGCTTATCTGGGGTAGTACCATGTACCATATAGAGGACCTTCCTTTCAGTACCAGCAGTTTACCAGATGTCTACACTCAGTTCCGCAAGTCCGTTGAATCCAAGTGCACAATCCGGATATGCATTAGAACTCCAACATTGCTCGGGCCACCACCAAACATAGAGGACTGGGGAAGCGTTCCTTCCATCGACCAGCTTGGACTCCATGAGGAAAAGGTTAGCAGAGGAATGAGGTTTATTGGGGGTGAAGCTGCAGCACTGAGCAGAGTAAATGAGTATTTCTGGAAGAAGGATTTGCTGAAGGTCTATAAAGCAACAAGGAATGGGATGTTGGGGGCTGATTACTCTACCAAATTCTCTCCATGGCTTGCTTCAGGAAGCCTCTCCCCCCGGTTCATATACCAAGAGGTAAAGAGATATGAGAAAGAGAGGCAAGCAAACGATTCCACATACTGGGTGTTGTTTGAATTGATATGGAGAGATTACTTCAGGTTCCTGTCAGTTAAATACAGAAATTCTCTTTTTCATCTAGGTGGACCGAGAAAAGTGGAGGCTAGATGGAGCCAAGACCAGACCATGTTCGAAGCTTGGAGAGATGGTTGTACAGGGTACCCTCTCATAGATGCTAATATGAAGGAACTGTCAGCCACAGGGTTCATGTCAAACCGAGGAAGGCAGATTGTATGCTCTTTTCTCGTTCGAGACATGGGCATTGACTGGCGTATGGGAGCTGAATGGTTTGAGACTTGCCTCCTCGATTACGACCCTTGTTCCAATTATGGAAATTGGACCTATGGAGCAGGTGTTGGGAATGACCCAAGAGAAGATCGCTATTTCAGCATCCCAAAGCAAGCAAAGACGTATGATCCTGAAGGGGAGTATGTAGCATTCTGGTTGCCAGAGTTACAAGCACTTCCAAATGATAAGAGGAACTTTCCTGGGAAATCATACATTAACCAAATTGTACCTCTCAAATTTGGCAACATTACTAGCAGTGGTGACAAGGACTCAGCCTCAGCAAGACGAACTGCCTTCAGAGGAAAACAGAGAAAAGGGCATATGAGATAG 1761 0.4617 MAVLSSSLSAFFIKKLVHPSKPTSIFSHYSTHPHLSAMNFPPRSKPGSAASATTSEVPDLPSNEMGKIVEQTFQRYSSSDEAKRNGSGVAIVWFRNDLRVLDNEALVKAWASSQAVLPVYCVDPRLFGTTHYFGFPKTGALRAQFLIECLADLKRNLMNRGLNLLIQHGKPEEILPSLAKTFEAHTVYAHKETCSEELNVERLVRNGLRQVVLPPSPGQSTSLSSSNHPKLQLIWGSTMYHIEDLPFSTSSLPDVYTQFRKSVESKCTIRICIRTPTLLGPPPNIEDWGSVPSIDQLGLHEEKVSRGMRFIGGEAAALSRVNEYFWKKDLLKVYKATRNGMLGADYSTKFSPWLASGSLSPRFIYQEVKRYEKERQANDSTYWVLFELIWRDYFRFLSVKYRNSLFHLGGPRKVEARWSQDQTMFEAWRDGCTGYPLIDANMKELSATGFMSNRGRQIVCSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAKTYDPEGEYVAFWLPELQALPNDKRNFPGKSYINQIVPLKFGNITSSGDKDSASARRTAFRGKQRKGHMR* 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0252 586 Gene3D DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 407 561 - -
Vvi4g0252 586 Pfam DNA photolyase 90 268 IPR006050 -
Vvi4g0252 586 SUPERFAMILY Cryptochrome/photolyase, N-terminal domain 87 285 IPR036155 -
Vvi4g0252 586 Pfam FAD binding domain of DNA photolyase 386 543 IPR005101 -
Vvi4g0252 586 PANTHER CRYPTOCHROME 88 557 IPR002081 -
Vvi4g0252 586 MobiDBLite consensus disorder prediction 564 586 - -
Vvi4g0252 586 MobiDBLite consensus disorder prediction 46 60 - -
Vvi4g0252 586 ProSiteProfiles Photolyase/cryptochrome alpha/beta domain profile. 88 221 IPR006050 -
Vvi4g0252 586 NCBIfam DASH family cryptochrome 89 533 IPR014133 GO:0003913|GO:0006281
Vvi4g0252 586 MobiDBLite consensus disorder prediction 37 62 - -
Vvi4g0252 586 SUPERFAMILY Cryptochrome/photolyase FAD-binding domain 308 544 IPR036134 -
Vvi4g0252 586 Gene3D HUPs 52 236 IPR014729 -
Vvi4g0252 586 PRINTS DNA photolyase signature 433 449 IPR002081 -
Vvi4g0252 586 PRINTS DNA photolyase signature 453 471 IPR002081 -
Vvi4g0252 586 PRINTS DNA photolyase signature 492 506 IPR002081 -
Vvi4g0252 586 Gene3D - 237 406 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0252 Vvi-Chr4 2199114 2208944 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0252 K25656 - vvi:100252689 1201.81