Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0250 ATGGCGATTTCGCTCTCCCTCTGTTCAAATATTATTCGTCAGAGACAGAGACACACGCCTGAATCAGTGAGACCGGTTCCCATACGGATATTAACAGTAGGGAAAAAGAGATCCCGTGGGGTACAACTCATTGTCGATGAGTACATTGAGAAGCTGAAATACTACTGCAGCCCGGATGATATCCAAATCCGGTCAAATCCTAAAAATGCTCGCGATGTGAAAGCTCAGGTTGAAAATGAAGATACAGCAGTCATGGGTCTCATCCGGCCTGACGATTGGGTTGTGATGTTGGATGAGCATGGGTTAGACCTTGGATCCATACAGATGGCTGAGTTACTCAGAGATGTCGGGAATACAGGAGCTGCAAGGTTATCATTTTGCATTGGTGGACCTTATGGTCATGGAGAGCAATTGAGAAAACGTGCTAACATATCGATCAAATTGTCTTCAATGGTCTTAAATCACCAAATTGCTCTACTTGTGCTCATGGAACAACTTTACCGGGCATGGACAATTCTAAAAGGGCAAAAATACCATCATTAA 543 0.4383 MAISLSLCSNIIRQRQRHTPESVRPVPIRILTVGKKRSRGVQLIVDEYIEKLKYYCSPDDIQIRSNPKNARDVKAQVENEDTAVMGLIRPDDWVVMLDEHGLDLGSIQMAELLRDVGNTGAARLSFCIGGPYGHGEQLRKRANISIKLSSMVLNHQIALLVLMEQLYRAWTILKGQKYHH* 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0250 180 Hamap Ribosomal RNA large subunit methyltransferase H [rlmH]. 26 180 IPR003742 GO:0006364|GO:0008168
Vvi4g0250 180 SFLD SPOUT Methyltransferase 11 180 - -
Vvi4g0250 180 PANTHER METHYLTRANSFERASE 13 180 IPR003742 GO:0006364|GO:0008168
Vvi4g0250 180 CDD RlmH-like 28 180 IPR003742 GO:0006364|GO:0008168
Vvi4g0250 180 PIRSF MT_bac 26 180 IPR003742 GO:0006364|GO:0008168
Vvi4g0250 180 Pfam Predicted SPOUT methyltransferase 28 179 IPR003742 GO:0006364|GO:0008168
Vvi4g0250 180 Gene3D - 27 180 IPR029026 -
Vvi4g0250 180 SUPERFAMILY alpha/beta knot 27 178 IPR029028 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0250 K00783 - vvi:100262959 361.688