Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0249 ATGTTGAAAGAAGTTAGGAAAAGGAGGGCTAAATATGAATCAGCCTGTGCTCTGGCAAAGTTGTTGATCCAAAAAGACACTTCATGGAAGACCACCGAAGCAGGGGAAGCTCAGAGTAAGCCTAAGCCCCACAAATACAGAAAAGAAGAGAAAGAAGATAGAGGAGCATCAAAGTTATCAACCCCTTCCTTGGATGATCAAATGAAAAAGGCCTCAAAATCTTCCTCCACTGAAAATAATGGTCATGAATTAGAAGTAGAACAGGAAGAAGCAGAAGAAGAAGAAGAGGAAGAGGAAGAGAAAGGAGATGACTACCAAGAAATATACAAAGATCCCATAACGACAGGGGAAACTCCATTATTTTTGGCAACAATGTGTGGGAATATCGAGATTGTGGAAGAAATACTGAATGTGCACCCTCAGGCACTTGAGCATATCAATAAAAAGGGGAGGAACATCCTGCATGTAGCCATCAAGTATAGCCAGAAAGAAATATTTGAACTGGTGATGAAGAAGGAAATACTGGCTAGGAGGCTCATAACCAGGACTGACAAGTTTGGGAATACGATACTGCATATGGCTGCAAGAAAGAAGAAGAGAAGTTATTTAGCAGAAAATATTCAAAGCCCAGCACTTCAACTGAGAAAGGAGTTGCTCCTATTTGAGCGGGTGAAGAAAATTTCTCCTACCTATGCCACCAAGCACCTAAACAAAAAGAAGCAAACTCCGGAGGAATTATTTGCCACCACCTATGCTCGACTCCATACCAACGGCAAAGAATGGATAAAGCGAACCTCCGAAAACTGCACCATTGTGGCTGTCCTCATCGCTACAGTTGCCTTCGCTGCAGCCTACACAATACCAGGAGGCTCCAATGAAGAAACTGGCCGTCCCATCCTTATCTACGAATCATTCTTCGTGGTTTTCACCTTGACTGACGTACTCTCCCTTACCTTCGCGTTAACGTCAGTGGTCACATTCCTTTCCATTCTCACCTCCTCCTTCCCGATACAAGCCTTCCGGCACTCTCTTCCTCAGAAGTTGATGGTGGGTCTAACGTTGTTGATACTCTCCGTCACCATGATGATGGTGGCGTTTGGTGCAACCATCATCCTCATGGTGAACAACAAGGAAAAATGGAAGCGGATTGGTCTCTACTTGGCTGCATTCTTCCCTGTTACCATCTTCGCCATCTCGTATTCGTCTCTGTACCTGTCGCTTCTGAGCACCGTACCCCACCTGCTGAAGATTGTATGGAAGGCTTGTCCGAGGTACGATTGTGCTCCTCTCCTGTCTTGGGTCCCCAAGTTGTTCCGACCGAAGAGCTCCGCATGGACTTCCAAGCCTCAAACAACTGGTGGTCATCAGGTTTGA 1374 0.4549 MLKEVRKRRAKYESACALAKLLIQKDTSWKTTEAGEAQSKPKPHKYRKEEKEDRGASKLSTPSLDDQMKKASKSSSTENNGHELEVEQEEAEEEEEEEEEKGDDYQEIYKDPITTGETPLFLATMCGNIEIVEEILNVHPQALEHINKKGRNILHVAIKYSQKEIFELVMKKEILARRLITRTDKFGNTILHMAARKKKRSYLAENIQSPALQLRKELLLFERVKKISPTYATKHLNKKKQTPEELFATTYARLHTNGKEWIKRTSENCTIVAVLIATVAFAAAYTIPGGSNEETGRPILIYESFFVVFTLTDVLSLTFALTSVVTFLSILTSSFPIQAFRHSLPQKLMVGLTLLILSVTMMMVAFGATIILMVNNKEKWKRIGLYLAAFFPVTIFAISYSSLYLSLLSTVPHLLKIVWKACPRYDCAPLLSWVPKLFRPKSSAWTSKPQTTGGHQV* 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0249 457 Coils Coil 74 108 - -
Vvi4g0249 457 Gene3D - 47 268 IPR036770 -
Vvi4g0249 457 SUPERFAMILY Ankyrin repeat 115 199 IPR036770 -
Vvi4g0249 457 PANTHER CASKIN 51 404 - -
Vvi4g0249 457 MobiDBLite consensus disorder prediction 85 104 - -
Vvi4g0249 457 Pfam Ankyrin repeats (3 copies) 111 172 IPR002110 GO:0005515
Vvi4g0249 457 MobiDBLite consensus disorder prediction 23 107 - -
Vvi4g0249 457 Pfam Domain of unknown function 259 372 IPR026961 -
Vvi4g0249 457 SMART ANK_2a 115 145 IPR002110 GO:0005515
Vvi4g0249 457 SMART ANK_2a 149 178 IPR002110 GO:0005515
Vvi4g0249 457 SMART ANK_2a 186 216 IPR002110 GO:0005515
Vvi4g0249 457 MobiDBLite consensus disorder prediction 60 81 - -
Vvi4g0249 457 MobiDBLite consensus disorder prediction 37 59 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0249 Vvi-Chr4 2175074 2177688 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0249 114 331 Miscellaneous Gene Families AT3G09550 26.718 1.03e-20 93.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0249 - - vvi:100853529 848.966