Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0244 ATGAATCAACGATCGTACCAACAAACCGAACGGTTCAACCTAGTTTATGCCTCCCCACCCCCTAAACCCAAACCTTACCCACCGCCACTCCCCATAGCCCAGGCTATCCGTTTTATCGGACCCGCTTGTCATCATCAACGAGGACCTTTTGATGACTGTGACAAAAAGATGGGGCCCAAGTCCTCTTTTCCACCTCCTCTTCTCTTGTTCCTGTCTTCTTTCCTACTCTTCTCCTCGGCCGCCCAGGCCTTTAACATCACCAGACTCCTGGGCCAGTTCCCTGATTTCTCCACCTTCAATAGCTATCTATCTCAGACCAACATCAGCATCGGGATTAATAGAAGACAGACCATTACCGTCCTCGCCGTTGAGAATGGCGCCATTGCTCCAATCACCGGCAAATCGATGGATGATATTAAGAACATCCTGCGCCTGCATGTGATTCTTGATTACTATGATGTTGCCAAGCTCCATAAGTTGTCCAACAAGACAGCTCTTCTAACCACCCTGTTCCAGGCCACTGGTCAGGCTAATGGGCAACAAGGGTTCTTGAATGTAACAGAATTGAGCAGTGGACAGGTTGTTTTCGGGTCTGCAGTAGCAGGGTCAGGTCTCCAAGCCAAGCTGGTTAAGACCGTTGCTTCTCAGCCTTTTAACATTTCCGTGCTTCAGATCAGCACCCCTATACTAGCCCCTGGTATTGGAGGGGTGGTGGCCGTCCCAGTTTCTCCACCACCTTCTGGATCGCCTGCTGCTGCGCCAAAGGCAGCTGAAGGTCCAGGGGCGTCCAAAACCACCCCACCTCCTGCCAAGGCTCCATCAGCAGAAGCTCCTGCACCATCTGATGACTCTGCTGAAGCCCCATCTTTTGCTGATGTGCCAGCAGCTGATGGCCCAGGGGCTGATGCGCCAGCTGGTGATGCTCCCCTCAGCTCTCCACCTATGCCTGCAGCTGATGGACCCGTGGCTGATGGATCACATGCAGATGCACCCAGTGCCGATCGAACTTCAGGCACCACTCAAGTAGCTATTGGCACATGCCTTGCTGTTGTAATGCCATTCGTGTTGGTCTTGTTAGATCTCTAG 1086 0.5249 MNQRSYQQTERFNLVYASPPPKPKPYPPPLPIAQAIRFIGPACHHQRGPFDDCDKKMGPKSSFPPPLLLFLSSFLLFSSAAQAFNITRLLGQFPDFSTFNSYLSQTNISIGINRRQTITVLAVENGAIAPITGKSMDDIKNILRLHVILDYYDVAKLHKLSNKTALLTTLFQATGQANGQQGFLNVTELSSGQVVFGSAVAGSGLQAKLVKTVASQPFNISVLQISTPILAPGIGGVVAVPVSPPPSGSPAAAPKAAEGPGASKTTPPPAKAPSAEAPAPSDDSAEAPSFADVPAADGPGADAPAGDAPLSSPPMPAADGPVADGSHADAPSADRTSGTTQVAIGTCLAVVMPFVLVLLDL* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0244 361 Gene3D FAS1 domain 82 225 IPR036378 -
Vvi4g0244 361 ProSiteProfiles FAS1/BIgH3 domain profile. 83 213 IPR000782 -
Vvi4g0244 361 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 68 235 IPR033254 -
Vvi4g0244 361 FunFam Fasciclin-like arabinogalactan protein 3 83 229 - -
Vvi4g0244 361 MobiDBLite consensus disorder prediction 245 337 - -
Vvi4g0244 361 SUPERFAMILY FAS1 domain 90 232 IPR036378 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0244 Vvi-Chr4 2140548 2143683 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0244 - - vvi:100256080 426.017