Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0222 ATGCTCTCTCGCATTATCCACTCAGAGTGGTGTAAAGCTGCATCGACGACGATGCAGCACGTCCATGCTCTCTCGTCTTCTCACGGAACCCTAGCTCTCTCCTCTGGACTTCGCTCTTCCTTTCCTTCATCCGCTACAATACGATGTCGTTTCCCCAGGAAGCTCTCTTCTGATGTTCCCCAAAATCTCTCTCACAAACCAAATCTCAAACGCCTCACTTCACGGATCGTTCAGCTCACTCGCAGGAGACAGCTCGATCAGATTTTTGAGGAAATTGAGATTGCCAAGAGAAGGCATGGGAAGCTGAACACCATTGTGATGAATGCAGTTATGGAGGCTTGTGTCCACTGTGGTGATGTTGATTTAGCTCTGAAGGTCTTTGGTGAGATGACAAAACCAGAGAGCTGTGGGGTTGACAATGTCACATATGGTACACTATTGAAGGGATTGGGTGAGGCACGAAGAATTGATGATGCATTTCAATTACTTGAATCTGTGGAACAAGGTACTGCTGTGGGAAGTCCGGAGTTATCAGCACCTCTTGTATGTAGTCTGCTCAATGCTCTTACTGAAGCAGGAGATCTACGCCGTGCTAATGGTCTTTTGGCACGTTATGGTTCTGTGCTTCATGAAGATGGCAGTCCTTCAATCTTGATGTACAACTTACTAATGAAGGGGTATATAACTGCAGGTTTTCCAATGGCTGCATTATCAGTGCATGATGAAATACTACAACAAGGATTAAAGCCTGATAGGCTCACCTATAATACTCTAATCTTTGCATGTGTGAAGACTGAAAAGTTGGACACCGCAATGCGTTATTTTGAGGAAATGAAGGAAAATGCACAGAAAACCATTGATGTTGATCTTTTCCCGGATGCTATCACTTACACTACATTACTTAAGGGTTTTGGGCATGCCAAGGATCTCCTCTCAGTTCAAAAGATTGTGATGGAAATGAAATCATCCAATAATTTATTTGTTGATCGAACTGCATATACTGCAATAGTTGATGCCTTGCTAAATTGTGGCTCAAGTAAAGGTGCCCTTTGCATGTTTGGAGAAATTATAAAGCGAGCTGGACAAAATTTCAACCTAAGGCCAAAACCTCACCTTTATATTTCTATGATGAGTGCTTTAGCTGCTAGAGGAGATTACAATTTGGTCAAAAGTCTACATAAGCGCATGAGGCCAGATTCTGCTGGAACTATCTCTCCTGCAGTTCAAATAGAGGCTGATCAGCTTCTCATGGAGGCAGCTCTGAATGATGGTCAGGTTGATGCAGCTACACACCATCTTTCAAATATTATTACAAGATGGAAAGGAATATGCTGGAGAAGTCGAGGAGGCATGGTTGCAGTGCGTTTAGAGGCATTGTTGGGCTTCACCAGATCAATGTTCAGTCCTTACCTACTTCCCCAGGTATCACCAGCTGACCCAATTGAGAATATCATGATGCCATTTGAAGAAGCTCGGCCACTACTAGCTACCTTGGACTTGAAAAGAGTAGTGATGCGTTTCTATAAGGATTCAGTTGTGCCTGTTATAGACGACTGGGGCAGCTGTGTGGGGCTATTGCACCGTGAAGATTGTAGAGAGTTGGATGCCCCAGTTTCGACAATGATGAGAAGCCCACCTCCTTGTGTTACAACCACGACATCAATTGGCCGAGTGGCTGATCTAATTTTGGAGAAGAGGTACAAAATGGTTGTTGTCGTAAAATATAGCAATTTATATGGTTCTTCTTACAGCTCAAGTTTGAGGGCAGTTGGAGTTTTTACCTCTGAGCAATTGTTTAAGCTGGCTATAGCATCAGAGATGCCAGGCCAAGAATTTCCTGTGGAGAAAAGAACAATGCAACAATGTCAAGGTATAGTTTGA 1881 0.4354 MLSRIIHSEWCKAASTTMQHVHALSSSHGTLALSSGLRSSFPSSATIRCRFPRKLSSDVPQNLSHKPNLKRLTSRIVQLTRRRQLDQIFEEIEIAKRRHGKLNTIVMNAVMEACVHCGDVDLALKVFGEMTKPESCGVDNVTYGTLLKGLGEARRIDDAFQLLESVEQGTAVGSPELSAPLVCSLLNALTEAGDLRRANGLLARYGSVLHEDGSPSILMYNLLMKGYITAGFPMAALSVHDEILQQGLKPDRLTYNTLIFACVKTEKLDTAMRYFEEMKENAQKTIDVDLFPDAITYTTLLKGFGHAKDLLSVQKIVMEMKSSNNLFVDRTAYTAIVDALLNCGSSKGALCMFGEIIKRAGQNFNLRPKPHLYISMMSALAARGDYNLVKSLHKRMRPDSAGTISPAVQIEADQLLMEAALNDGQVDAATHHLSNIITRWKGICWRSRGGMVAVRLEALLGFTRSMFSPYLLPQVSPADPIENIMMPFEEARPLLATLDLKRVVMRFYKDSVVPVIDDWGSCVGLLHREDCRELDAPVSTMMRSPPPCVTTTTSIGRVADLILEKRYKMVVVVKYSNLYGSSYSSSLRAVGVFTSEQLFKLAIASEMPGQEFPVEKRTMQQCQGIV* 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0222 626 Pfam Pentatricopeptide repeat domain 289 322 IPR002885 -
Vvi4g0222 626 Gene3D Tetratricopeptide repeat domain 287 457 IPR011990 GO:0005515
Vvi4g0222 626 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 216 250 IPR002885 -
Vvi4g0222 626 SUPERFAMILY CBS-domain pair 502 580 IPR046342 -
Vvi4g0222 626 Pfam PPR repeat family 103 150 IPR002885 -
Vvi4g0222 626 Pfam PPR repeat family 215 264 IPR002885 -
Vvi4g0222 626 Gene3D Tetratricopeptide repeat domain 49 170 IPR011990 GO:0005515
Vvi4g0222 626 Gene3D Tetratricopeptide repeat domain 181 286 IPR011990 GO:0005515
Vvi4g0222 626 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 103 133 IPR002885 -
Vvi4g0222 626 Pfam PPR repeat 373 397 IPR002885 -
Vvi4g0222 626 Gene3D - 497 601 IPR046342 -
Vvi4g0222 626 ProSiteProfiles CBS domain profile. 541 609 IPR000644 -
Vvi4g0222 626 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 139 169 IPR002885 -
Vvi4g0222 626 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 251 285 IPR002885 -
Vvi4g0222 626 PANTHER OS09G0431600 PROTEIN 28 610 IPR044781 -
Vvi4g0222 626 NCBIfam pentatricopeptide repeat 254 281 IPR002885 -
Vvi4g0222 626 NCBIfam pentatricopeptide repeat 141 165 IPR002885 -
Vvi4g0222 626 NCBIfam pentatricopeptide repeat 107 131 IPR002885 -
Vvi4g0222 626 NCBIfam pentatricopeptide repeat 219 251 IPR002885 -
Vvi4g0222 626 CDD CBS_pair_SF 504 573 - -
Vvi4g0222 626 Pfam CBS domain 538 579 IPR000644 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0222 Vvi-Chr4 1940914 1949481 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0222 214 441 Glycosyltransferase AT1G05670 25.000 3.60e-10 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0222 - - vvi:100266225 1215.68