Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0217 ATGGAGAAATCTTGTAGTCTGCTCATCTACTTTGACAAAGGGACCCCTGCTATTGCAAATGAGATAAAGGAAGCGCTTGAAGGCAATGATGATTATGCAAAGATTGAAGCCATGAAAAAGGCAATCATGCTTTTGTTGAATGGTGAAACCTTACCTCAGCTTTTCATCACTATAGTTCGATATGTATTGCCATCTGAAGATCACACAGTCCAGAAACTGTTACTTCTTTATTTGGAGATTATTGAGAAAACTGATGCAAAAGGTAAGGTTATGCCCGAAATGATTTTGATTTGCCAGAATCTGAGGAATAATCTTCAGCACCCCAACGAGTACATCCGTGGTGTAACATTAAGGTTTCTTTGCCGATTGAATGAGGCTGAGATAATTGAGCCTTTGATCCCTTCTGTTTTGCAAAATTTGGAGCATCGACATCCATTTATTAGGAGAAATGCAATTCTTGCTGTAATGTCAATTTATAAGCTTCCACAAGGCGAGCAGCTTTTGGTTGATGCACCTGAAATGATTGAAAAGGTTCTTTCTACGGAGCAGGATCCATCAGCAAAAAGGAACGCATTCCTTATGCTTTTCACTTGTGCCCAGGATCGTGCTATTAATTATTTACTAACCCATGTTGATAGGGTTCCAGAATGGGGAGAATTGCTTCAGATGGTTGTGTTGGAATTGATCCGAAAAGTCTGCAGAACCAACCGGGGAGAGAAGGGAAAGTACATAAAGATCATTATATCTTTATTGAATGCCCCTTCAACAGCTGTTATTTATGAATGTGCTGGAACTCTTGTTTCTTTGTCCTCTGCTCCTACGGCAATTAGAGCTGCAGCCAACACCTATTGTCAGCTTCTTCTCTCTCAGAGTGATAACAATGTGAAACTTATTGTACTTGATCGCCTTAATGAACTCAAGTCTTCTCATAGAGAAATTATGGTTGACATGATAATGGATGTGCTCAGGGCACTTTCAAGTCCAAACCTTGACATTAGAAGGAAGACACTTGATATTGTGCTTGAGTTGATAACTCCACGGAACATCAATGAGGTTGTTCTTACCTTAAAGAAGGAAGTTGTGAAGACTCAGAGTGGAGAGCTTGAGAAGAATGGGGAGTATCGGCAAATGCTCATCCAAGCAATTCATTCTTGTGCAATTAAGTTTCCTGAAGTGGCAAGCACAGTGGTTCATCTGTTGATGGATTTCTTGGGAGACAGCAATGTGGCTTCAGCTATCGATGTGGTTGTTTTTGTGCGAGAGATAATTGAGACCAACCCAAAACTTAGGGTCTCAATAATAACTAGGCTGTTGGACACTTTCTACCAGATCCGAGCTGCACGTGTTTGCTCATGTGCTCTTTGGATCATTGGAGAGTATTGTCTCTCACTCTCTGAGGTTGAGAGTGGTATTACAACCATTAAACAGTGTCTTGGGGACTTACCTTTCTTCTCTGTCTCTGAAGAAGGGGAAGCTTCTGATTCTTCAAAGAAGGTTCAGCAAGTGAATGCCACAACTGTTTCTTCCAGAAGACCAGCTGTCCTTGCTGATGGGACTTATGCCACCCAGAGTGCCGCCTCTGAAACTGCTTTCTCACCTCCTACCCTTGTTCAAGGATCCTTGTCTTCTGGGAATTTGAGATCCCTTCTTCTCACTGGTGACTTTTTTCTGGGGGCAGTTGTGGCCTGCACACTGACAAAGCTTGTTTTGCGATTGGAAGAGGTTCAGCCATCAAAAGCTGAAGTTAACAAAGTATCTAGCCAAGCATTATTGATCATGGTCTCAATGCTGCAATTAGGGCAATCTTCAGTTCTTCCTCACCCAATTGATAATGATTCTTATGATAGGATTGTTCTCTGTATAAGATTGCTTTGCAATACTGGTGATGATATCAGGAAGATATGGCTGCAGTCTTGCCGCCAGAGTTATGTTAAAATGCTGGCAGACAAACAGTTAAGGGAAACAGAGGAGATAAAAGCAAAGGCTCAGATCTCTTATGCCCAGCCAGATGACCTCATTGACTTTTACCATTTAAAGAGCAGGAAGGGCATGAGTCAGCTGGAGTTGGAAGATGAAGTCCAAGATGATTTAAAACGTGCAACTGGAGAGTTCATCAAGGATGGGGATGATGCAAATAAGCTAAACCGCATTCTTCAACTCACTGGATTTAGTGACCCTGTATATGCAGAAGCATATGTGACAGTTCATCATTATGATATTGTCCTTGATGTTACTGTTATCAATCGAACAAAGGAGACCCTCCAGAATCTGTGCTTGGAATTGGCCACTATGGGTGATCTTAAACTTGTTGATCGTCCGCAAAACTATACTCTAGCTCCTGAATCAAGCAAGCAAATAAAGGCCAATATTAAGGTGTCTTCAACTGAAACTGGTGTCATATTTGGGAACATTGTTTATGAGACTTCAAACGTGCATGAGCGAATGGTTGTTGTCCTCAATGACATTCACATTGACATCATGGACTACATATCTCCTGCTGTTTGTACTGATGTGGCCTTCAGAACTATGTGGGCAGAGTTTGAATGGGAAAACAAGGTTGCTGTCAACACAGTATTACAAAATGAGAAGGAATTTCTTGAGCACATTATCAAATCAACCAACATGAAGTGCCTCACTGCCTCGTCAGCACTGGATGGTGATTGTGGATTCTTGGCTGCTAACCTCTATGCAAAGAGCGTGTTTGGGGAGGATGCCTTGGTAAACATAAGCATTGAGAAACAGGCAGATGGGAAACTGAGTGGGTATATCAGGATAAGGAGCAAGACCCAGGGGATTGCTCTCAGTCTTGGGGACAAGATCACTCTCAAGCAGAAGGGAGGCAGTTGA 2847 0.4211 MEKSCSLLIYFDKGTPAIANEIKEALEGNDDYAKIEAMKKAIMLLLNGETLPQLFITIVRYVLPSEDHTVQKLLLLYLEIIEKTDAKGKVMPEMILICQNLRNNLQHPNEYIRGVTLRFLCRLNEAEIIEPLIPSVLQNLEHRHPFIRRNAILAVMSIYKLPQGEQLLVDAPEMIEKVLSTEQDPSAKRNAFLMLFTCAQDRAINYLLTHVDRVPEWGELLQMVVLELIRKVCRTNRGEKGKYIKIIISLLNAPSTAVIYECAGTLVSLSSAPTAIRAAANTYCQLLLSQSDNNVKLIVLDRLNELKSSHREIMVDMIMDVLRALSSPNLDIRRKTLDIVLELITPRNINEVVLTLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFPEVASTVVHLLMDFLGDSNVASAIDVVVFVREIIETNPKLRVSIITRLLDTFYQIRAARVCSCALWIIGEYCLSLSEVESGITTIKQCLGDLPFFSVSEEGEASDSSKKVQQVNATTVSSRRPAVLADGTYATQSAASETAFSPPTLVQGSLSSGNLRSLLLTGDFFLGAVVACTLTKLVLRLEEVQPSKAEVNKVSSQALLIMVSMLQLGQSSVLPHPIDNDSYDRIVLCIRLLCNTGDDIRKIWLQSCRQSYVKMLADKQLRETEEIKAKAQISYAQPDDLIDFYHLKSRKGMSQLELEDEVQDDLKRATGEFIKDGDDANKLNRILQLTGFSDPVYAEAYVTVHHYDIVLDVTVINRTKETLQNLCLELATMGDLKLVDRPQNYTLAPESSKQIKANIKVSSTETGVIFGNIVYETSNVHERMVVVLNDIHIDIMDYISPAVCTDVAFRTMWAEFEWENKVAVNTVLQNEKEFLEHIIKSTNMKCLTASSALDGDCGFLAANLYAKSVFGEDALVNISIEKQADGKLSGYIRIRSKTQGIALSLGDKITLKQKGGS* 949
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0217 948 Pfam Adaptin N terminal region 18 488 IPR002553 GO:0006886|GO:0016192|GO:0030117
Vvi4g0217 948 Gene3D - 10 524 IPR011989 -
Vvi4g0217 948 SUPERFAMILY ARM repeat 11 638 IPR016024 -
Vvi4g0217 948 FunFam Coatomer subunit beta 11 531 - -
Vvi4g0217 948 PIRSF Beta-COP 1 948 IPR016460 GO:0005737|GO:0006886
Vvi4g0217 948 Pfam Coatomer beta C-terminal region 669 807 IPR011710 GO:0005198|GO:0006886|GO:0016192|GO:0030126
Vvi4g0217 948 Pfam Coatomer beta subunit appendage platform 813 940 IPR029446 -
Vvi4g0217 948 PANTHER COATOMER SUBUNIT BETA 3 947 IPR016460 GO:0005737|GO:0006886
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0217 Vvi-Chr4 1904131 1909484 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0217 K17301 - vvi:100242255 1821.21