Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0210 ATGGCTGGTGAGCAGCATCTCTTAGCTACCGAGATTGTGAACCGTGGAATCGAATCCTCCGGCCCTAATGCTGGATCCCAGACCTTTTCAGTGAGGGTCCGACGGAGGCTGCCGGACTTTGTCCAATCTGTGAATCTTAAGTATGTGAAATTGGGGTATCATTATCTCATCAACCATGCCATCTACTTGGCCACCATCCCTGTCCTGGTGCTTGTCTTCAGCGCTGAGGTTGGGAGTCTCAACAAGGAGGAGCTCTGGAAGAAGCTCTGGGAGGACGCCCGCTACGACCTCGCCACTGTCCTCGGTTTCTTCGGCGTCTTCGTCTTCACCCTCTCCGTTTACATCATGTCCCGCCCCCGCTCCATCTACCTCATTGACTTCGCATGCTTCAAACCCCACGACGATCTCAAGTTGTCGAAGCAGCAGCTGATCGAAGCGGTTAGAAGATCTGGAAAGCACGACGAGGCGAGCATAGAGTTTCAGAAGAGAATTCTAATGTCATCAGGCATAGGAGACGAGACGTACATCCCAAAGGCGGTGATGGCCGGAGAGAACTGCGCGACGATGAAAGAAGGACGAGCAGAGGCCGGGATGGTGATGTTCGGGGCGCTGGACGAGCTCTTCGAGAAAACCAGAGTCCGGCCGAAGGACGTGGGGGTGCTGGTGGTGAACTGCAGCATATTCAATCCAACTCCATCACTCTCTGCGATGATCATCAACCACTACAAGATGCGAGGCAACATCCTGAGCTTCAATTTGGGCGGAATGGGGTGTAGTGCGGGAGTGATAGCCTTAGATCTGGCTCGCGACATGCTCGAATCGAATCCAAACAACTACGCCGTAGTGGTGAGCACAGAGATGGTGGGATACAATTGGTATCCGGGAAAAGAGCGGTCCATGATCATACCCAACTGTTTCTTCCGCATGGGCTGCTCTGCTCTGCTTCTCTCCAACCGCCGGAGTGACTACCGGCATGCAAAGTACCGGCTCGAACACATTGTTCGCACGCATAAAGGTGCTGATGACAGAAGCTTCAGGTGTGTTTACCAGGAAGAAGACTCAGAGAGGTTCAAGGGGCTGAGAGTGAGCAAAGACTTGATCGAGATAGGCGGGGACGCGCTCAAAACCAATATCACCACCTTGGGGCCTCTGGTGCTTCCCTTCTCTGAGCAGCTTCTCTTCTTCGCCACCCTGGTCTGGAGGAACCTCTTCGGCCACGGGGGCCCTCAGCAGCCGCCGACAAAGCCATACATCCCCGACTACAAGCTCGCATTCGAGCACTTCTGCGTCCACGCCGCCAGCAAGACCGTGCTGGACGAGCTGCAGAGGAACTTGGGATTGAGCGACAGCAACGTGGAGGCTTCGCGCATGACCCTGCACCGCTTCGGCAACACTTCGAGCAGCAGCATTTGGTACGAGTTGGCGTATTTGGAAGCTAAGGAGAGGGTGAAAAGGGGAGACCGAGTCTGGCAAATTTCATTTGGGTCTGGGTTCAAGTGCAATAGCCTTGTGTGGAGGGCTATGCGCCGGGTGAAGAAGCCCTCAAGCAATCCTTGGCTTGACTGCCTTGACAGATACCCGGTGTACCATTAA 1593 0.5455 MAGEQHLLATEIVNRGIESSGPNAGSQTFSVRVRRRLPDFVQSVNLKYVKLGYHYLINHAIYLATIPVLVLVFSAEVGSLNKEELWKKLWEDARYDLATVLGFFGVFVFTLSVYIMSRPRSIYLIDFACFKPHDDLKLSKQQLIEAVRRSGKHDEASIEFQKRILMSSGIGDETYIPKAVMAGENCATMKEGRAEAGMVMFGALDELFEKTRVRPKDVGVLVVNCSIFNPTPSLSAMIINHYKMRGNILSFNLGGMGCSAGVIALDLARDMLESNPNNYAVVVSTEMVGYNWYPGKERSMIIPNCFFRMGCSALLLSNRRSDYRHAKYRLEHIVRTHKGADDRSFRCVYQEEDSERFKGLRVSKDLIEIGGDALKTNITTLGPLVLPFSEQLLFFATLVWRNLFGHGGPQQPPTKPYIPDYKLAFEHFCVHAASKTVLDELQRNLGLSDSNVEASRMTLHRFGNTSSSSIWYELAYLEAKERVKRGDRVWQISFGSGFKCNSLVWRAMRRVKKPSSNPWLDCLDRYPVYH* 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0210 530 Pfam 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 426 506 IPR013747 -
Vvi4g0210 530 PANTHER 3-KETOACYL-COA SYNTHASE 103 528 IPR012392 GO:0006633|GO:0016020|GO:0016747
Vvi4g0210 530 FunFam 3-ketoacyl-CoA synthase 132 507 - -
Vvi4g0210 530 Pfam FAE1/Type III polyketide synthase-like protein 114 402 IPR013601 GO:0006633|GO:0016020|GO:0016747
Vvi4g0210 530 CDD CHS_like 97 505 - -
Vvi4g0210 530 PIRSF Very_long_ch_3-ktacl-CoA_syn 39 530 IPR012392 GO:0006633|GO:0016020|GO:0016747
Vvi4g0210 530 SUPERFAMILY Thiolase-like 108 325 IPR016039 GO:0016746
Vvi4g0210 530 Gene3D - 115 507 IPR016039 GO:0016746
Vvi4g0210 530 SUPERFAMILY Thiolase-like 331 507 IPR016039 GO:0016746
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0210 Vvi-Chr4 1854713 1856919 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0210 2 528 Miscellaneous Gene Families AT2G26250 75.000 0.0 875
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0210 K15397 - vvi:100252499 1066.22