Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0207 ATGTCTGACGACGATGATTTCCAGGAGATTCCTCTCACCCAAGCAACTCAACAACCTCTCAAGCCCTCCGATTCATCGCGTCGGCCATCCAAGCGGCCAAAGGCTGCGGCCACCGCCGCTCCTGGCAAGGAGAATGTGCCGCCGAGTCGGAAAAAGAGAGATTGTTCGGAGAGAGAGGAGTTGAAATCCAAGGGGAGTTATTTATGTGATTCTATTGAGTCTAGGTTGCTGAATGCCAGATCTGGTGGCGACGGCAATATTACTTGTGGATTCAGTGAGGAATCGGAGGGGAGCTATTCGTGTAATTCTGTGGAGTCTAGGTTGCTGAAGTCGAGATCTGGTGGTGATGGCGATGGAAATGGTGGATTCTGTGAGGAATCGGATGAGGATTTTGAGCAGCTTGACGTATTGATCAGGCTGTGTTCTGAGGGCGAAGAGGAACCTGATTCTGATGGATTTCGATTTCGTGAACAGCGGGGCAGTGGTTCGGAAGGACGAGGGTTGGTTCGGTGTCCTTTATGTGAGATTGACATTTCGGATTTGAACGATGAGTTGCGACAGGTCCATACTAATGGTTGCCTTGACAGACTGGAGGCTGATAATGTCCTTCGGAATGGTGACAGAGAATGTCAATTTCCTCAGCCCTTTAATGATGGATCTCCTGTTCAAACTCATCAGAAAGTGGTTGATGTATCTCCTGTTATTGGATGGATACACAGTCTGGGTTTAGGAAGATATGAAGAAGCTTTTATCAGAGAAGAGATTGATTGGGACACTCTGCAGCGGTTGACAGAAGAGGATCTATTGAACATAGGCGTCACTGCACTTGGACCAAGGAAGAGGATCGTTCATGCCCTTAGTGAACTTAGAAAAGGGAGCACTCATACGGTTGACATCCACACACATGTCCCTGCCCTCAGTGAACTTAGAAAACAAAGCACTCATGGAGTAGAGATAGAAGCTGATGCTTCTAAAGCCACTGTTGATGAAACCAGTAAGCTAGCTGCAAACAAGTTGATTACTGATTATTTTCCAGGCTCTGTTACTGATAGGAGCAGAGGTTGCATTTCGTCTGGAGAGCGAAAGGCTGCTGAAAAAATCCAGTTAGGTTCTAGTAGGAAGCAAGTTGTGGTGAAAAATCATGCCAGGAGTGGAAAACTCAGGGACCTTCCCTTGTGGTGTTGTATACCAGGAACACCATTTCGAGTGGATGCTTTTCGATACCTTCGAAGAGATTGTTCCCATTGGTTTCTTACTCATTTTCACTTGGATCATTATCAAGGCCTTACCAGGTCCTTTTGTCATGGGAAGATTTATTGTTCTGCCATCACAGCAAGGCTTGTAAACATGAAGATTGGGATCCCATGGGACAGATTACAAATTTTACCCCTTAACCAGAAGATCAATATTGATGGTGTTGATGTGACATGCTTGGATGCAAACCACTGCCCTGGTTCCATAATAATACTCTTTGAACCATCCAATGGTAAGGCTGTCCTACACACAGGAGATTTTCGATTTAGTGAGGAAATGACAAGCATGTCTGTTCTGCAAATGTGTCCTATCCATACTCTAATTCTAGATACTACTTATTGCAACCCTCAGTATGACTTTCCAAAGCAGGAGGCTGTAATACAGTTTGTTATTGATGCGATCCAAGCTGAAGCTTTTAACCCAAGGACTCTTTTTTTGATTGGTAGTTACACGATTGGTAAGGAAAGGCTTTTCTTGGAGGTTGCTCGTGTTCTCCGTAAGAAGGTATATGTAAATGCAGCTAAACTGCATATTCTAGAATGCTTGGAGTTCCAGAAGGAAGATATGCAGTGGTTTACATTAAATGAACAGGAGAGCCACATTCATGTTGTGCCTATGTGGACACTAGCAAGCTTCAAACGATTGAAGCATATCTCCAATCAATATGCGGGTCGATTCAGTCTTATAGTTGCTTTCTCTCCTACTGGTTGGACATTCGGTAAAGGAAAGAAAAAGACTCCAGGGAGAAGGTGGCAGCAGGGTACCATCATAAGGTATGAAGTGCCATACAGTGAACATAGCAGCTTCACAGAACTCAGAGAGTTTGTCAAGTTTGTGTCTCCTGTAAACATAATTCCGAGTGTCAATAATCACGGGTCAGAATCTGTGGACACCATGGTTCGCCTCCTATCATCCTGA 2172 0.4471 MSDDDDFQEIPLTQATQQPLKPSDSSRRPSKRPKAAATAAPGKENVPPSRKKRDCSEREELKSKGSYLCDSIESRLLNARSGGDGNITCGFSEESEGSYSCNSVESRLLKSRSGGDGDGNGGFCEESDEDFEQLDVLIRLCSEGEEEPDSDGFRFREQRGSGSEGRGLVRCPLCEIDISDLNDELRQVHTNGCLDRLEADNVLRNGDRECQFPQPFNDGSPVQTHQKVVDVSPVIGWIHSLGLGRYEEAFIREEIDWDTLQRLTEEDLLNIGVTALGPRKRIVHALSELRKGSTHTVDIHTHVPALSELRKQSTHGVEIEADASKATVDETSKLAANKLITDYFPGSVTDRSRGCISSGERKAAEKIQLGSSRKQVVVKNHARSGKLRDLPLWCCIPGTPFRVDAFRYLRRDCSHWFLTHFHLDHYQGLTRSFCHGKIYCSAITARLVNMKIGIPWDRLQILPLNQKINIDGVDVTCLDANHCPGSIIILFEPSNGKAVLHTGDFRFSEEMTSMSVLQMCPIHTLILDTTYCNPQYDFPKQEAVIQFVIDAIQAEAFNPRTLFLIGSYTIGKERLFLEVARVLRKKVYVNAAKLHILECLEFQKEDMQWFTLNEQESHIHVVPMWTLASFKRLKHISNQYAGRFSLIVAFSPTGWTFGKGKKKTPGRRWQQGTIIRYEVPYSEHSSFTELREFVKFVSPVNIIPSVNNHGSESVDTMVRLLSS* 724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0207 723 CDD SAM_superfamily 234 288 - -
Vvi4g0207 723 Gene3D - 396 706 IPR036866 -
Vvi4g0207 723 MobiDBLite consensus disorder prediction 1 64 - -
Vvi4g0207 723 SUPERFAMILY SAM/Pointed domain 229 291 IPR013761 -
Vvi4g0207 723 SUPERFAMILY Metallo-hydrolase/oxidoreductase 399 705 IPR036866 -
Vvi4g0207 723 MobiDBLite consensus disorder prediction 7 24 - -
Vvi4g0207 723 PANTHER DNA CROSS-LINK REPAIR PROTEIN PSO2/SNM1-RELATED 386 718 - -
Vvi4g0207 723 FunFam DNA cross-link repair 1A protein 537 684 - -
Vvi4g0207 723 Pfam SAM domain (Sterile alpha motif) 231 290 IPR001660 GO:0005515
Vvi4g0207 723 MobiDBLite consensus disorder prediction 46 64 - -
Vvi4g0207 723 ProSiteProfiles SAM domain profile. 229 292 IPR001660 GO:0005515
Vvi4g0207 723 Gene3D - 225 300 IPR013761 -
Vvi4g0207 723 SMART SAM_4 226 292 IPR001660 GO:0005515
Vvi4g0207 723 Pfam DNA repair metallo-beta-lactamase 605 709 IPR011084 -
Vvi4g0207 723 CDD SNM1A-1C-like_MBL-fold 381 534 - -
Vvi4g0207 723 FunFam DNA ligase 6 396 554 - -
Vvi4g0207 723 Gene3D - 537 684 - -
Vvi4g0207 723 SMART Lactamase_B_5a 313 536 IPR001279 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0207 Vvi-Chr4 1823202 1829020 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0207 232 286 Glycosyltransferase AT3G07170 43.636 1.39e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0207 K15340 - vvi:100256089 1408.66