Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0205 ATGGAGGGGGAGCAGAAATGGTGTGTTGTGACTGGGGGGAGGGGTTTTGCTGCACGGCATTTGGTGGAAATGCTCATTCGCTCTGGGAGATTTTCAGTTCGAATTGCAGACTTGGGACCCTCTATCAAGTTGGAACCGAGCGAGGAGAAGGGACTACTTGGTGAAGCTCTGCAGTCTGGTCGTGCTGAATATGTATCTGCCGACCTTCGAGACAAGGCTCAAGTGCTTAAAGCATGCCAAGGAGCTGAGGCTGTTTTCCACATGGCTGCTCCAGATTCATCCATTAACAATCACCAGCTCCATCATTCAGTCAATGTGCAAGGAACAAAGAATGTAATTGATGCCTGTATTGAGCAAAAAGTAAAGAGACTTATCTATACAAGCTCTCCTAGTGTGGTTTTTGATGGGGTTCACGGAATATTTAATGGGGACGAGTCACTGCCGTATCCAGATAAGCACAATGATTCATATTCGGCAACTAAAGCTGAAGGAGAGGCATTGGTGATCAAGTCAAATGGTACTAATGGACTTCTGACATGCTGCATACGTCCAAGCAGCATCTTTGGCCCTGGCGATAAGTTGTTGGTTCCGTCTTTGGTTAATGCTGCAAGGGCTGGGAAATCCAAGTTCATCATTGGTGATGGCAATAACATGTATGATTTCACTTATGTTGAAAATGTGGCACATGCCCATATATGTGCTGAACAAGCTCTGGCTTCAGAAGGGAAGATTGCAGAGCAAGCTGCAGGGCAGGCATACTTTATAACCAATATGGAACCAATCAAGTTTTGGGAGTTTGTCTCACTTATTCTTGAAGGTCTTGGCTATGAAAGGCCAAGAATAAAGATCCCTGCCTTGGTTATGATGCCTATCGCACACATGGTGGAGTGGACCTATAAGATGTTAGCCCCATATGGTATGAAGGTTCCTCAGTTGACCCCTTCAAGAATTAGGCTCCTCTCTTGCAGCAGAACTTTTAGTTGTTCAAAAGCGAAGGATCAACTTAGCTACACGCCCATTGTATCACTCCAGGAGGGTCTAAGGAGGACAATTGATTCATACCCAGATTTGAGAGCTGAACATCTTCCTAAAAGAGAGGGACCATCTAAAGCTTCCAGATATCTTGGAAGTGGAAGAGTGGCTGACACACTTCTGTGGAAGGATAAAAAGCTGGCACTCACCACATTGTTAGTTTTGATGGCGTTTTACCACAACTTCATTGCATCTGGCTATACCATCGTCACTGCAGTTTCAAAACTTTTCTTGGTGGCATCAATATTCTTGTTCATCCATGGCAATTTACCTGAGAAAATATTGGGGTATACGGTTGAGAAAATTCCTCCATCAAATTTCCATTTCTCAGAAGAGAGGTCACATCGAGCTGCTCTCTCAGTAGCTTCATCATGGAATACTGCTGTAAATGTTTTAAAATCTCTTTGCAAGGGGGATGACTGGATGCTGTTCCTTAAGGTTGTTCTCTCCCTATTGATTCTCAGCTTCCTTGGAGCTATTTCACTGCAAAGCTTATTTGTTACAGGGCTTCTAATTGCCTTTGTAGCTTTCTACATCTATGAGAACAAGGAAGAAGAAATCGACAGACTGGCTTCAGAAGCTCTCTCCTTCAGCTGCAAATTGAAATCTGATATAGCCAAAAAATTACCTACCTTCAAGAAATTCAGTCCTAGTCGGTAA 1692 0.4374 MEGEQKWCVVTGGRGFAARHLVEMLIRSGRFSVRIADLGPSIKLEPSEEKGLLGEALQSGRAEYVSADLRDKAQVLKACQGAEAVFHMAAPDSSINNHQLHHSVNVQGTKNVIDACIEQKVKRLIYTSSPSVVFDGVHGIFNGDESLPYPDKHNDSYSATKAEGEALVIKSNGTNGLLTCCIRPSSIFGPGDKLLVPSLVNAARAGKSKFIIGDGNNMYDFTYVENVAHAHICAEQALASEGKIAEQAAGQAYFITNMEPIKFWEFVSLILEGLGYERPRIKIPALVMMPIAHMVEWTYKMLAPYGMKVPQLTPSRIRLLSCSRTFSCSKAKDQLSYTPIVSLQEGLRRTIDSYPDLRAEHLPKREGPSKASRYLGSGRVADTLLWKDKKLALTTLLVLMAFYHNFIASGYTIVTAVSKLFLVASIFLFIHGNLPEKILGYTVEKIPPSNFHFSEERSHRAALSVASSWNTAVNVLKSLCKGDDWMLFLKVVLSLLILSFLGAISLQSLFVTGLLIAFVAFYIYENKEEEIDRLASEALSFSCKLKSDIAKKLPTFKKFSPSR* 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0205 563 CDD 3b-HSD-NSDHL-like_SDR_e 7 354 - -
Vvi4g0205 563 Gene3D - 1 358 - -
Vvi4g0205 563 Pfam Reticulon 380 537 IPR003388 -
Vvi4g0205 563 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 4 358 IPR036291 -
Vvi4g0205 563 FunFam Reticulon-like protein 1 359 - -
Vvi4g0205 563 ProSiteProfiles Reticulon domain profile. 380 563 IPR003388 -
Vvi4g0205 563 PANTHER BIFUNCTIONAL POLYMYXIN RESISTANCE PROTEIN ARNA 8 353 - -
Vvi4g0205 563 Pfam 3-beta hydroxysteroid dehydrogenase/isomerase family 9 283 IPR002225 GO:0003854|GO:0006694|GO:0016616
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0205 Vvi-Chr4 1807927 1816035 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0205 9 369 Lipid Metabolism Gene Families AT2G33630 32.632 4.09e-51 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0205 K23558 - vvi:100257631 1098.57