Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0202 ATGAAGTGCCTCTTCTTGGGATATTCCAGACTTCAGAAGGGTTATCGTTGTTATTCCCTTGAGACTCATCGGTACTTTATCTCCGCTGATGTCACCTTCTTTGAGGACTCACCATTCTTTTCCACCACTTCTGAGTCTCTTCCTGTTTCTGAAGTCTTGCCCATTCCCATTGTCTCTCCACCTGATGCTATGCCCCCTCGACCACTTCAGGTTTATCATCGTCGCCCTCGTGTCGTTGCTCCTCTCCCTTTTCCTGAGGCACCTGCTGACTCACTTCCTATCCCTTCGGCTTCACCTGCCCCGGCTCTGCCTTCTCCTAATGACTTACCTATTGCTGTTCGGAAAGGTACTCGCTCTACTCGTAATCCTCATCCTATTTACAATTTTTTGAGTTATCATCGATTATCTTCACCCTATTCTGCTTTTGTTTATGCTATATCCTCTGTTTCTTTTCCAAAGAGCACCCATGAAGCTCTTTCCCATCCAGGCTGGAGACAGGCAATGGTGGATGAAATGGCTGCTCTGCACTCTAATGGCACTTGGGATCTTGTTGTTTTACCCTCTGGTAAATCTACAGTTGGTTGTCGTTGGGTCTATGCAGTTAAGGTTGGTCCTGATGGTCAGGTTGATCGCCTTAAGGCCCGTTTAGTTGCTAAAGGCTATACTCAAGTTTATGGTTCTGATTATGGTGACACATTCTCCCCTGTTGCCAAGATTGCTTCTGTCCGCTTGCTTCTCTCCATGGCTGCTATGTGTTCTTGGCCTCTTTATCAGTTGGATATTAAAAATGCCTTTCTTCATGGTGATCTTGCCGAGGAAGTTTATATGGAGCAACCTCCTGGTTTTGTTGCTCAGGGGGAGTCTGGTTTAGTGTGCAGGTTACGCCGTTCTCTATATGGCTTGAAACAATCTCCTCGAGCATGGTTTAGCCGTTTTAGTTCTGTTGTTCAAGAGTTTGGCATGCTTCGTAGTACAGCAGACCATTCAGTTTTTTATCATCATAACTCCTTGGGGCAGTGTATTTATCTGGTTGTTTATGTGGACGACATCGTCATTACAGGCAGTGATCAGGATGGTATTCAGAAACTAAAGCAACATCTTTTTACCCACTTTCAGACCAAAGACTTGGGGAAACTCAAGTATTTCTTGGGAATTGAGATAGCTCAATCCAGTTCTGGTGTGGTCCTTTCCCAAAGGAAGTATGCTTTAGACATCCTGGAAGAAACCGGTATGTTAGACTGTAAACCGGTAGACACACCTATGGATCCGAATGTCAAACTTGTACCAGGACAGGGGGAGCCTTTAGGAGACCCCGGGAGATATCGACGACTCGTAGATGCAGATTGGGCTGGCTCACCCACAGATAGACGTTCCACTTCAGGGTACTGTGTTTTTATTGGAGGTAATCTAATATCTTGGAAGAGTAAGAAACAAGATGTAGTGGCCAGATCTAGCGCTGAAGCCGAGTATCGAGCTATGGCTTTGGCAACATGTGAACTCATATGGTTGAGACATCTTCTTCAGGAGTTGAGATTTGGAAAGGATGAACAGATGAAACTCATCTGTGATAACCAGGCCGCATTACATATTGCATCCAATCCAGTCTTTCATGAAAGGACCAAGCATATTGAAGTTGACTGTCATTTCATTAGAGAGAAGATCGCATCAGGATGTGTTGCTACAAGTTTTGTCAATTCAAATGATCAACTAGCAGACATCTTCACTAAATCTCTCAGAGGTCCTAGGATTAAATATATTTGTAACAAGCTTGGTGCATATGATGCTGTTAAAGTCTGTATAGAGAATGTTTCAAATGCTCAAGAGGAATTTGAATTTTATAGACAAAGTTCTTCCCAGTGTAAATGTTTTCTTCAGGAGGTTTTGGGCATCATTGGGGGATATCTGCCACATGGTGATGGAAATTATTTGAATTCTGAATCTGACATTCTAAAGGCAGTAGATAAGGGTTATATAACTCCCAAATTACATGAACTCCTTCAACTTTTCCAATCCTTTGGAGTAGCTAGGAAAGTATTGTGCCTCATTTTTGTAGAGAGAATCATAACAGCTAAAGTAATCGAAAGATTCATTAAGAAAATTATATACTTATCACATTTCACGGTTTCATATTTAACTGGGAGTAATTCATCGGTCGATGCACTTGCACCAAAGGCGCAAAGGGAAACCTTGGAATCATTTCGCTCTGGGAAGGTTAACCTATTATTTGCAACTGATGTGGTTGAGGAGGGAATTCATGTGCCAAACTGCTCCTGTGTTATTCGTTTTGACCTACCGAAGACTGTTCGTAGTTATGTCCAATCACGAGGACGAGCTCGGCAAAGTGATTCCCAATTTATCATCATGCTTGAGAGGGGAAACACAGAGCAAAGGGATCAATTGTTTGATATCATCAGGAGTGAGTATTCCATGACGGATACTGCTACAAATAGAGACCCTGATGGGTACACCTTGAAAGCATACACTATTGAGGAAATGGATTCATATTTTGTGGATTCGACTGGTGCATCTGTCACTGCAGATTCTAGTGTCAGTCTTATTCATCGATATTGTGAAAAGCTTCCAGGAGATAAGTACTTCACTCCTAAGCCATTTTTTCATTTCACATATTTGGAAGGGATGTATGAGTGTAAATTAACATTACCTCCTAATGCGGCTTTTCAAACAATTATTGGTCCTGGGAACAAGAATTCTCATTTATCAAAACAGCTAGTATGCTTGGAAGCATGTAAGAAGCTTCATCAAATGGGGGCTCTCGATGATCATCTTCTCCCTTATGTTGAAGAGCCTTCAGAAAATGATATCATTGTAAAAAGCAAAGGATCAGCTGCAGGTGCAGGAACAACAAAAAGGAAAGAATTACATGGGACAACTCAAACTTGTGCATTATCTGGAACTTGGGGAGATAAAATTGATGGGGCCATTTTCCAGGCCTATAAAATAGATTTCTCCTGCAATATTGTTAATGAGCTGTATTCGGGATTTGTTCTTTTGATTGAATCAAAACTGGATGATGATGTGGGAAATATTGAAATGGAACTCTACTTGATCTCCAAGTTTGTCAGAACATCTGTTTCTTCATGCGGTCAAGTGTCTCTAGATGCAGAACAGGTGATGAAAGCAATGCGCTTCCACGAATTGTTCTTTAACAGTCTGTTTGGGAGATTGTTTATTGGATCAAAATCATCTGGAGTGCGAAGAGAATTTTTACTTAACACACAACAAAAATCATTATGGAGCTCATCAAACATGTATTTGCTGTTACCAATTGAGTCATCAAACATTCCAAGTGATGAATCTTGGAGAATAAATTGGCCAGGAATCAACTCTTGTGCTTCTGTTGTAGAATTTTTAGAAAAACGTTCTCAGTTAAGTACTGGAAATATGAATGATGATACTGGAAATCCATCACCCTGTAGCACTGGCTTAGTTGAGACAGAATGCAAAAGCATCAGTACTGTCCACTTAGCTAATAATTCAGTTCACGTGAACAACCTTAAAAATATGGTGGTTTTGGCTATTCATACAGGAAGAATTTACTCCATTCTAGATGTAGTGATTGACACATCTGCTGAGAGTCCTTTTGATGGAAGTGCTGATGTTAACTCTTCTAATTATACAACCTTTGCTGAGTACTTCAATAACAAGTATGGGATTGTACTAATGTATCCGGGACAGCCTCTGTTGCTGTTAAAGCAAAGTCATAATGCACATAATCTTCTTGTAAACTTTAACGATGAAGGTGGTGAGGCATTGCAAACTGGCCAGAAAATGCTCAACGAGAAGGCTCAAACTCATGTTCATATGCCACCTGAGCTTTTAGTCAGTATTGAAGTACCAATAACTGTCTTAAAATCATCTTACTTACTCCCATCATTGATCCACCGTCTGGAGTCCTTGATGTTAGCTAGCCAGCTTAGAGAAGAGATTGCTTTTACTACTGGCTCTCAGATCTCAAGCTCATTGATTCTGGAAGCAATTACAACTCTTCGATGCTCTGAAAGTTTTTCTATGGAGCGTTTAGAATTGCTTGGGGATTCAGTGTTGAAGTATGCTGTGAGCTGCCACCTCTTTCTCAAATATCCCAAGAAACATGAAGGGCAATTATCTGCTAGACGCTCATGGGTTGTTTGTAACTCAACCCTTCATAAATTGGGGACTGATCGCAGTTTACAGGGCTATATAAGAGATGGTGCATTTGATCCTCGTCGTTGGGTTGCTCCAGGACAGCGTTCTATACGCCCTGTTCCTTGTTCATGTGGGGTGGATGCATTGGAGGTGCCTTTAGACGGAAAATTTCAAACTGAAGACACAAAAATTGTGGTTGGAAAATCCTGTGATAGGGGTCATAGATGGATGGGCTCAAAAACGATAGCCGATTGTGTTGAAGCCCTTATAGGAGCATACTATGTTGGTGGTGGATTAAATGCTGCTCTTCATTTGATGAAATGGTTTGGTATTGATGTTGAACTTGAGCCCTCATTGGTAGATGAAGCCATTGCCACTGCATCTCTCCGAACTTACATTCCTAAAGCTAATGAGATTGAAATCCTAGAGTCTAAGATTGGGTATGAATTCTCTGTCAAGGGTCTGTTACTGGAGGCTATAACACATGCAACTGAGCAAGAACTTGGAGTTGGCTACTGCTACCAGCGGCTTGAATTTCTTGGCGACTCTGTGCTGGATGTGCTTATTACATGGCATCTCTATCAGAGCCACAGAGATATTGATCCAGGGGAGTTGACTGACCTGCGATCAGCTTCTGTTAATAATGAAAGTTTTGCCCAAGTTGCTGTAAGACGGAACCTTCAGCAGCATCTTCAACATTGCTCTGGTTTACTTTTAGGTCAAATAAAAGAGTATGCGAAGTATCTTTCTGGTTCTGATGATGTCCCCAATCCACTCCAGAGCACAAAAGGTCCTAAAGCTCTTGGAGACTTGGTGGAGAGTATAGCAGGAGCAATACTAATTGATACCAAGCTTAATCTCAATGAAGTGTGGAGAATCTTTAAACCACTTTTATCTCCAATAGTAACCCCTGATAAACTTGAGCTGCCTCCACTGCGTGAACTGAATGAATTATGTGATTCTCTCGGCTATTTTATAAAAGAAAAATGTACGAATAAGGGAGAACTGGTGCATGCGGAGCTTAGATTACAGATGATTGATGTCCTATTGGTTGGTGAGGGATGTGGCCGGAACAAAAAGGCTGCAAAAGGTCAAGCTGCTGCTCAATTGTTGAAAAACCTGGAGAAAAGAGGAATTTCATACTCCCGGAGTAATTCCAAGAGGAGAAAACAGGGTGCAGACTTGGTTGGTGTTTCATCGTCCCTGAACATGGGTGGTGATGCATGTGGACAATCCAATAATGAAGATTCTTCAGAGTTGATAAAATTCCACAAAAAACAGAAGACAACAGGAATGCAGTTGTGTACAAGAACTTCCATTGCCAACAACTGTCTCGAGAATGCTTGCAAACCGAAGCTCGACACCCCAGTCATTAAATCAATAAACATGAAGAAAGGAGGACCCCGCTCCTCTCTTTATGAATTATGCAAACGACTACAGTGGCCAATGCCCAGTTTTGAATCAAAAGAACAAAGATCAAGATTCCCGATTATATTTGGTGAAGGCTCTGAAAGAAGGGAAGGCTTTAACAGTTTCATATCCAGCATCTCCTTGCATATACCCAATTGCGGTGTCATGGAATGCCGGGGTGATCATAGAGCAGACAAGAAGAGTTCACTCGACTCTGCAGCCCTTGTCATGCTTCATGAGCTTCAACGACGGGGGAAGCTCATCATCCATGATTAA 5832 0.4172 MKCLFLGYSRLQKGYRCYSLETHRYFISADVTFFEDSPFFSTTSESLPVSEVLPIPIVSPPDAMPPRPLQVYHRRPRVVAPLPFPEAPADSLPIPSASPAPALPSPNDLPIAVRKGTRSTRNPHPIYNFLSYHRLSSPYSAFVYAISSVSFPKSTHEALSHPGWRQAMVDEMAALHSNGTWDLVVLPSGKSTVGCRWVYAVKVGPDGQVDRLKARLVAKGYTQVYGSDYGDTFSPVAKIASVRLLLSMAAMCSWPLYQLDIKNAFLHGDLAEEVYMEQPPGFVAQGESGLVCRLRRSLYGLKQSPRAWFSRFSSVVQEFGMLRSTADHSVFYHHNSLGQCIYLVVYVDDIVITGSDQDGIQKLKQHLFTHFQTKDLGKLKYFLGIEIAQSSSGVVLSQRKYALDILEETGMLDCKPVDTPMDPNVKLVPGQGEPLGDPGRYRRLVDADWAGSPTDRRSTSGYCVFIGGNLISWKSKKQDVVARSSAEAEYRAMALATCELIWLRHLLQELRFGKDEQMKLICDNQAALHIASNPVFHERTKHIEVDCHFIREKIASGCVATSFVNSNDQLADIFTKSLRGPRIKYICNKLGAYDAVKVCIENVSNAQEEFEFYRQSSSQCKCFLQEVLGIIGGYLPHGDGNYLNSESDILKAVDKGYITPKLHELLQLFQSFGVARKVLCLIFVERIITAKVIERFIKKIIYLSHFTVSYLTGSNSSVDALAPKAQRETLESFRSGKVNLLFATDVVEEGIHVPNCSCVIRFDLPKTVRSYVQSRGRARQSDSQFIIMLERGNTEQRDQLFDIIRSEYSMTDTATNRDPDGYTLKAYTIEEMDSYFVDSTGASVTADSSVSLIHRYCEKLPGDKYFTPKPFFHFTYLEGMYECKLTLPPNAAFQTIIGPGNKNSHLSKQLVCLEACKKLHQMGALDDHLLPYVEEPSENDIIVKSKGSAAGAGTTKRKELHGTTQTCALSGTWGDKIDGAIFQAYKIDFSCNIVNELYSGFVLLIESKLDDDVGNIEMELYLISKFVRTSVSSCGQVSLDAEQVMKAMRFHELFFNSLFGRLFIGSKSSGVRREFLLNTQQKSLWSSSNMYLLLPIESSNIPSDESWRINWPGINSCASVVEFLEKRSQLSTGNMNDDTGNPSPCSTGLVETECKSISTVHLANNSVHVNNLKNMVVLAIHTGRIYSILDVVIDTSAESPFDGSADVNSSNYTTFAEYFNNKYGIVLMYPGQPLLLLKQSHNAHNLLVNFNDEGGEALQTGQKMLNEKAQTHVHMPPELLVSIEVPITVLKSSYLLPSLIHRLESLMLASQLREEIAFTTGSQISSSLILEAITTLRCSESFSMERLELLGDSVLKYAVSCHLFLKYPKKHEGQLSARRSWVVCNSTLHKLGTDRSLQGYIRDGAFDPRRWVAPGQRSIRPVPCSCGVDALEVPLDGKFQTEDTKIVVGKSCDRGHRWMGSKTIADCVEALIGAYYVGGGLNAALHLMKWFGIDVELEPSLVDEAIATASLRTYIPKANEIEILESKIGYEFSVKGLLLEAITHATEQELGVGYCYQRLEFLGDSVLDVLITWHLYQSHRDIDPGELTDLRSASVNNESFAQVAVRRNLQQHLQHCSGLLLGQIKEYAKYLSGSDDVPNPLQSTKGPKALGDLVESIAGAILIDTKLNLNEVWRIFKPLLSPIVTPDKLELPPLRELNELCDSLGYFIKEKCTNKGELVHAELRLQMIDVLLVGEGCGRNKKAAKGQAAAQLLKNLEKRGISYSRSNSKRRKQGADLVGVSSSLNMGGDACGQSNNEDSSELIKFHKKQKTTGMQLCTRTSIANNCLENACKPKLDTPVIKSINMKKGGPRSSLYELCKRLQWPMPSFESKEQRSRFPIIFGEGSERREGFNSFISSISLHIPNCGVMECRGDHRADKKSSLDSAALVMLHELQRRGKLIIHD* 1944
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0202 1943 Gene3D - 1692 1759 - -
Vvi4g0202 1943 ProSiteProfiles Ribonuclease III family domain profile. 1309 1480 IPR000999 GO:0004525|GO:0006396
Vvi4g0202 1943 SUPERFAMILY dsRNA-binding domain-like 1689 1758 - -
Vvi4g0202 1943 Gene3D - 1856 1935 - -
Vvi4g0202 1943 FunFam Dicer-like 104 1160 1281 - -
Vvi4g0202 1943 Pfam PAZ domain 1170 1304 IPR003100 GO:0005515
Vvi4g0202 1943 CDD SF2_C_dicer 657 789 - -
Vvi4g0202 1943 FunFam Endoribonuclease dicer-like 1 652 815 - -
Vvi4g0202 1943 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 661 796 IPR027417 -
Vvi4g0202 1943 FunFam Endoribonuclease dicer-like 1 1515 1687 - -
Vvi4g0202 1943 SUPERFAMILY DNA/RNA polymerases 178 548 IPR043502 -
Vvi4g0202 1943 FunFam Dicer-like 104 1304 1492 - -
Vvi4g0202 1943 CDD RNase_HI_RT_Ty1 445 578 - -
Vvi4g0202 1943 Pfam Helicase conserved C-terminal domain 675 778 IPR001650 -
Vvi4g0202 1943 CDD RIBOc 1327 1498 IPR000999 GO:0004525|GO:0006396
Vvi4g0202 1943 ProSitePatterns Ribonuclease III family signature. 1557 1565 IPR000999 GO:0004525|GO:0006396
Vvi4g0202 1943 Gene3D paz domain 1156 1281 - -
Vvi4g0202 1943 SUPERFAMILY RNase III domain-like 1520 1686 IPR036389 GO:0004525|GO:0006396
Vvi4g0202 1943 SUPERFAMILY RNase III domain-like 1321 1498 IPR036389 GO:0004525|GO:0006396
Vvi4g0202 1943 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1734 1758 IPR014720 -
Vvi4g0202 1943 SMART riboneu5 1536 1689 IPR000999 GO:0004525|GO:0006396
Vvi4g0202 1943 SMART riboneu5 1327 1500 IPR000999 GO:0004525|GO:0006396
Vvi4g0202 1943 Pfam Ribonuclease III domain 1345 1479 IPR000999 GO:0004525|GO:0006396
Vvi4g0202 1943 Pfam Ribonuclease III domain 1557 1665 IPR000999 GO:0004525|GO:0006396
Vvi4g0202 1943 Gene3D Dicer dimerisation domain 844 942 IPR038248 -
Vvi4g0202 1943 ProSiteProfiles PAZ domain profile. 1171 1284 IPR003100 GO:0005515
Vvi4g0202 1943 SMART PAZ_2_a_3 1143 1308 IPR003100 GO:0005515
Vvi4g0202 1943 SUPERFAMILY PAZ domain 1169 1281 IPR036085 GO:0005515
Vvi4g0202 1943 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 667 819 IPR001650 -
Vvi4g0202 1943 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 849 939 IPR005034 GO:0016891
Vvi4g0202 1943 ProSiteProfiles Ribonuclease III family domain profile. 1521 1666 IPR000999 GO:0004525|GO:0006396
Vvi4g0202 1943 SMART helicmild6 691 781 IPR001650 -
Vvi4g0202 1943 PANTHER DICER-RELATED 417 1767 - -
Vvi4g0202 1943 Pfam Dicer dimerisation domain 849 934 - -
Vvi4g0202 1943 Gene3D - 649 813 IPR027417 -
Vvi4g0202 1943 CDD RIBOc 1537 1687 IPR000999 GO:0004525|GO:0006396
Vvi4g0202 1943 Gene3D Ribonuclease III domain 1512 1686 IPR036389 GO:0004525|GO:0006396
Vvi4g0202 1943 Gene3D Ribonuclease III domain 1309 1491 IPR036389 GO:0004525|GO:0006396
Vvi4g0202 1943 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 178 421 IPR013103 -
Vvi4g0202 1943 FunFam Endoribonuclease dicer-like 1 844 940 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0202 Vvi-Chr4 1770095 1786297 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0202 446 591 Receptor kinase-like Gene Family AT4G23160 48.993 2.48e-35 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0202 K11592 - vvi:100254311 2679.43