Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0201 ATGCATTCTCCGGAATTGGCCAATCCTCTGAAGCGAAGTTTCGACGAGATGAACTTGAAACGCGACGCAGACGATGATTCGAATCCACCGCCATCGCCATTGCCATCTTCATCGTCTTCTTCCAAGGAGCTCAGTCCAAGAAGCTATCAGTGGAAGGTGTTCGAAGTCGCGAAGCGGCGGAACACGATTGCGGTGTTGGACACTGGGACTGGGAAGACAATGATCGCTTTGATGTTGATTAGGGAGATAGGTCAAGCTGTGAAGGCTGATGGCCGTAAATTATTCATTATTTTCTTGGCTCCTACTGTTCATCTGGTTAATCAGCAATTTAAAGTTATAAAGGACAGTACAGGTTTTGAAGTTGAAGAATACTATGGAGCCAAGGGGGTTGATGAATGGAGTGCAAAGTCCTGGGAGAAGGAAATTAGTGAGCACGATGTACTTGTTATGACACCCCAGATCCTATTAGATGCCTTGAGGAAAGCATTCTTAAGTCTGGAAACAGTATGCTTGATGATAGTTGATGAGTGCCATCGTGCCACTGGTAACCATCCCTATACAAAAATAATGAAGGAATTTTATCACAAATCTGTCGACAAGCCAAAGATTTTTGGAATGACAGCATCACCTGTAATTAGAAAAGGTGTCTCATCTTCTATGGATTGTGAGAATCAAATATCAGAACTTGAAAGCATTTTGGACTGCCAGATTTATACTATTGAGGACAGGACAGAACTGGAAGTATTTATTCCTTCTGCAAAAGAAATCAATAGATTTTATGATGCATCTCAGTTTCACAATTTGGATTTGAAAGCAAAGCTAAAATCTTCATGGTCCAAGTTTGACAATTTGTTGCTAAATTTGCAAGGGTCACCAATGACTCAGTACAAAGACATGGATGATAAACTTAAGGCATTGCGGAAACGCTTGTCCAATGATCATGCAAAGATCTTGTATTGCCTGGATGACCTTGGACTCATATGTGCTTATGAGGTCTCATTTTCTCCCATTCAAGGACTTCTCTCATTTTTAATGCTATAG 1041 0.4111 MHSPELANPLKRSFDEMNLKRDADDDSNPPPSPLPSSSSSSKELSPRSYQWKVFEVAKRRNTIAVLDTGTGKTMIALMLIREIGQAVKADGRKLFIIFLAPTVHLVNQQFKVIKDSTGFEVEEYYGAKGVDEWSAKSWEKEISEHDVLVMTPQILLDALRKAFLSLETVCLMIVDECHRATGNHPYTKIMKEFYHKSVDKPKIFGMTASPVIRKGVSSSMDCENQISELESILDCQIYTIEDRTELEVFIPSAKEINRFYDASQFHNLDLKAKLKSSWSKFDNLLLNLQGSPMTQYKDMDDKLKALRKRLSNDHAKILYCLDDLGLICAYEVSFSPIQGLLSFLML* 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0201 346 Gene3D - 40 278 IPR027417 -
Vvi4g0201 346 SMART ultradead3 42 249 IPR014001 -
Vvi4g0201 346 MobiDBLite consensus disorder prediction 1 43 - -
Vvi4g0201 346 FunFam Endoribonuclease dicer-like protein 41 280 - -
Vvi4g0201 346 CDD DEXHc_dicer 47 242 - -
Vvi4g0201 346 Pfam Type III restriction enzyme, res subunit 45 210 IPR006935 GO:0003677|GO:0005524|GO:0016787
Vvi4g0201 346 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 18 211 IPR027417 -
Vvi4g0201 346 PANTHER HELICASE WITH DEATH DOMAIN-RELATED 40 263 - -
Vvi4g0201 346 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 53 228 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0201 Vvi-Chr4 1758028 1767008 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0201 K11592 - vvi:100254311 623.239