Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0200 ATGGAGGAAGTAGAGCTCATTTTTCAAAATAAAGATGATTTGGATCTGGCATGTTGGAATGCAATGATGTTTGGGTACATAATAAGCAATGACGGTAACAAAGCATTGGGGCTGTTTAGTCTAATCAACAGAAGTGGAGAGAAGTCAGATCAGATCACATTGGCAACTGCAGCTAAAGCCTGTGGTTGCTTAGTGTTGTTAGATGAAGGAAAGCAAATTCACGCTCACGTAATAAAAGCAGGGTTTGATTCAGATTTATATGTCAATAGTGGAATTCTAGATATGTATATCAAATGTGGAGACATGGTGAATGCAGGCATCGTATTCAATTATATATCTGCACCTGATGATGTTGCATGGACATCCATGATTTCAGGATGCGTGGATAATGGGAATGAGGACCAGGCTCTTAGGATATACCATCCGATGAGGCAATCCGGGGTCATGCCTGATGAATACACATTTGCTACCCTCATCAAAGCTAGCTCTTATGTAACAGCATTGGAACAAGGAAGACAGCTGCATGCAAATGTGATCAAGTTGGATTGTGTTTCAGACCCTTTTGTCGGGACTTCACTTGTTGACATGTATGCGAAGTGTGGCAACATAGAAGATTCTTATCGGTTATTTAAGAAAATGAATGTGAGGAACATCGTGCTATGGAATGCCATGTTAGTGGGTATAGCTCAACATGGGAATGCTGAAGAAGCCGTTAACCTTTTCAAGAGTATGAAATCTCATGGAATTGAACCTGATAGAGTCTCCTTTATTGGAATCCTTTCAGCCTGTAGCCTTGCTGGCTTAACTTCTGAGGCCTATGAGTATTTTCATTCAATGCCCAATGATTGCGGTATTGAGCCTGAGATTGAGCATTATTCTTGTCTAGTTGATGCCCTAGGGCGTGCAGGGCTCGTCCAAGAGGTAGATAAAGTGATTGAAACGATGCCCTTCAAAGCTTCTGCTTCAATGAATAGAGCCCTTCTTGGTGCTTGTAGGATCCAAGGGGATGTAGAAATTGGAAAGCGTGTGGCTGCACGACTCTTTGCTTTGGAACCATTCGACTCTGCAGCTTATGTTCTTTTGTCTAATATCTATGCTGCTGCCAATCGATGGGATGATGCAACTTATGCTAGAAAAATGATGAAGAGGAAGAATGTAAAGAAAGATCCTGGGTTTAGTTGGATTGATGTGAAGAACAAGCTGCATTTGTTTTTGAAAGAGCGGTCTCTCTATTACCATAGTGAAAAGCTTGCGATAGCTTATGGACTTATAAGCACTCTTGATTAA 1287 0.4126 MEEVELIFQNKDDLDLACWNAMMFGYIISNDGNKALGLFSLINRSGEKSDQITLATAAKACGCLVLLDEGKQIHAHVIKAGFDSDLYVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHPMRQSGVMPDEYTFATLIKASSYVTALEQGRQLHANVIKLDCVSDPFVGTSLVDMYAKCGNIEDSYRLFKKMNVRNIVLWNAMLVGIAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILSACSLAGLTSEAYEYFHSMPNDCGIEPEIEHYSCLVDALGRAGLVQEVDKVIETMPFKASASMNRALLGACRIQGDVEIGKRVAARLFALEPFDSAAYVLLSNIYAAANRWDDATYARKMMKRKNVKKDPGFSWIDVKNKLHLFLKERSLYYHSEKLAIAYGLISTLD* 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0200 428 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 217 251 IPR002885 -
Vvi4g0200 428 Pfam PPR repeat 291 315 IPR002885 -
Vvi4g0200 428 Pfam PPR repeat 18 46 IPR002885 -
Vvi4g0200 428 Gene3D Tetratricopeptide repeat domain 19 164 IPR011990 GO:0005515
Vvi4g0200 428 FunFam Uncharacterized protein 284 405 - -
Vvi4g0200 428 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 116 150 IPR002885 -
Vvi4g0200 428 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 116 416 IPR046960 GO:0003723|GO:0009451
Vvi4g0200 428 FunFam Uncharacterized protein 42 170 - -
Vvi4g0200 428 Pfam E motif 336 396 IPR046848 -
Vvi4g0200 428 NCBIfam pentatricopeptide repeat 118 152 IPR002885 -
Vvi4g0200 428 NCBIfam pentatricopeptide repeat 219 252 IPR002885 -
Vvi4g0200 428 Gene3D Tetratricopeptide repeat domain 165 281 IPR011990 GO:0005515
Vvi4g0200 428 Gene3D Tetratricopeptide repeat domain 282 403 IPR011990 GO:0005515
Vvi4g0200 428 FunFam Pentatricopeptide repeat-containing protein mitochondrial 171 280 - -
Vvi4g0200 428 Pfam PPR repeat family 115 161 IPR002885 -
Vvi4g0200 428 Pfam PPR repeat family 216 263 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0200 Vvi-Chr4 1744408 1753124 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0200 1 426 Glycoside Hydrolase AT3G49170 33.684 2.19e-93 298
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0200 - - vvi:100267901 781.941