Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0199 ATGCGCAATGTACAAAGGCACTTCCATAAAACCACAATCTCCCCATTCTCCAACACCCTCCCCACCTTCCTTTACCTCCATTTCACCTCTCTCTTCAGCCCCTTCTCGTCGTTTTCACACTCATCTTCCTCACAATGGTTCTCTCTCCTCCGAACCGCCATCTCAACCCACAACTTACTTCTCGGGAAATGCACCCACGCCCGCATTGTTGTTTCCGGCTCCGCCGGCGACCATTTTCTGTCCAACAACCTCCTGACTATGTACTCCAAATGTGGGTCCCTCTCCTCCGCTCGCCAGGTGTTCGACACAACTCCCGAGCGAGACCTTGTCACTTGGAACGCGATTCTCGGTGCCTATGCTGCGTCTGTTGACTCCAATGACGGTAATGCTCAAGAGGGGCTTCATCTTTTTCGGCTTTTACGGGCGTCGTTGGGTTCGACTACTAGGATGACCTTGGCTCCTGTGTTGAAGCTGTGTTTGAATTCTGGGTGTTTGTGGGCTGCCGAGGGGGTTCATGGGTATGCGATTAAGATTGGGTTGGAATGGGATGTTTTTGTTTCTGGGGCACTTGTGAATATTTATTCCAAGTGTGGGAGGATGAGGGATGCTAGGCTTTTGTTTGATTGGATGCGGGAAAGGGACGTGGTGTTGTGGAATATGATGCTTAAGGGATATGTGCAATTGGGTCTTGAGAAGGAGGCATTTCAACTCTTCTCAGAGTTCCATCGGAGCGGGTTACGGCCTGATGAGTTCAGTGTGCAATTAATTCTTAATGGGGTTTCTGAAGTGAATTGGGATGAAGGCAAGTGGCTTGCGGACCAGGTTCAAGCTTATGCTGCTAAATTATCTTTGTCTGATGATAATCCGGATGTGTTTTGTTGGAATAAGAAATTGTCTGAGTGTCTCTGGGCGGGTGATAATTGGGGTGCAATTGAATGCTTCGTGAATATGAATGGATTAAATATAGATTACGATGCTGTGACATTACTTGTGGTTTTGGCTGCAGTTGCAGGTACAGATGATTTAGAATTGGGGAAACAAGTCCATGGCATTGCAGTGAAATCAGGTTTGGATTCAGACGTCTCTGTTGCAAATAGTCTTGTCAACATGTATTCAAAGATGGGTTGTGCTTATTTTGCAAGAGAAGTGTTCAATGACATGAAACATTTGGATTTAATTTCATGGAACTCAATGATATCAAGCTGTGCTCAGAGTAGTTTAGAGGAGGAATCAGTGAACCTATTTATAGATCTATTACATGAGGGCCTAAAACCAGATCATTTTACATTGGCTAGCGTTTTGAGGGCTTGCTCCTCTCTTATAGATGGCTTGAATATTAGTAGACAAATTCATGTTCATGCTCTAAAAACTGGTAACATTGCTGACAGTTTTGTAGCCACGACGCTTATTGATGTTTATTCCAAGAGTGGAAAAATGGAGGAAGCAGAGTTCCTTTTTCAAAATAAAGATGATTTGGATCTGGCATGTTGGAATGCAATGATGTTTGGGTACATAATAGGCAATGACGGTAAGAAAGCATTGGAGCTGTTTAGTCTAATCCACAAAAGTGGAGAGAAGTCAGATCAGATCACATTGGCAACTGCAGCTAAAGCCTGTGGTTGCTTAGTGTTGTTAGATCAAGGAAAGCAAATACACGCTCACGCAATAAAAGCAGGGTTTGATTCAGATTTACATGTCAATAGTGGAATTCTAGATATGTATATCAAATGTGGAGACATGGTGAATGCAGGCATCGTATTCAATTATATATCTGCACCTGATGATGTTGCATGGACATCCATGATTTCAGGATGCGTGGATAATGGGAATGAGGACCAGGCTCTTAGGATATACCATCGGATGAGGCAATCCAGGGTCATGCCTGATGAATACACATTTGCTACCCTCATCAAAGCCAGCTCTTGTGTAACAGCATTGGAACAAGGAAGACAACTGCATGCAAATGTGATCAAGTTGGATTGTGTTTCAGACCCTTTTGTCGGGACTTCACTTGTTGACATGTATGCGAAGTGTGGCAACATAGAAGATGCTTATCGGTTATTTAAGAAAATGAATGTGAGGAACATCGCGCTATGGAATGCCATGTTAGTGGGTTTAGCTCAACATGGGAATGCTGAAGAAGCCGTTAACCTTTTCAAGAGTATGAAATCTCATGGAATTGAACCTGATAGAGTCTCCTTTATTGGAATCCTTTCAGCCTGTAGCCATGCTGGCTTAACTTCTGAAGCCTATGAGTATTTACATTCAATGCCCAATGATTACGGTATTGAGCCTGAGATTGAGCATTATTCTTGTCTAGTTGATGCCCTAGGGCGTGCAGGGCTCGTCCAAGAGGCAGATAAAGTGATTGAAACGATGCCCTTCAAAGCTTCTGCTTCAATTAATAGAGCCCTTCTTGGTGCTTGTAGGATCCAAGGGGATGTAGAAACTGGAAAGCGTGTGGCTGCACGGCTCTTTGCTTTGGAACCATTCGACTCTGCAGCTTATGTTCTTTTGTCTAATATCTATGCTGCTGCCAACCGATGGGATGATGTAACTGATGCTAGAAAAATGATGAAGAGGAAGAATGTAAAGAAGGATCCCGGGTTTAGTTGGATTGATGTGAAGAACATGCTGCATTTGTTTGTGGTGGATGATAGATCACACCCCCAAGCTGATATAATCTATGACAAAGTAGAGGAAATGATGAAAACAATCAGAGAAGATGGATATGTTCCTGATACGGAATTCGTGCTGCTTGATGTAGAAGATGAGGAGAAAGAGCGGTCTCTCTATTACCATAGTGAAAAGCTTGCGATAGCTTATGGACTTATAAGCACTCCTGCATCAACCACAATCCGAGTGATTAAAAACCTTAGAGTTTGTGGGGATTGCCATAATGCAATCAAGTACATATCGAAAGTTTTTGAAAGAGAAATTGTGTTGAGAGATGCAAATCGCTTCCACCATTTTAGAGATGGAGTATGCTCTTGTGGGGATTATTGGTAA 3009 0.4324 MRNVQRHFHKTTISPFSNTLPTFLYLHFTSLFSPFSSFSHSSSSQWFSLLRTAISTHNLLLGKCTHARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERDLVTWNAILGAYAASVDSNDGNAQEGLHLFRLLRASLGSTTRMTLAPVLKLCLNSGCLWAAEGVHGYAIKIGLEWDVFVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQLGLEKEAFQLFSEFHRSGLRPDEFSVQLILNGVSEVNWDEGKWLADQVQAYAAKLSLSDDNPDVFCWNKKLSECLWAGDNWGAIECFVNMNGLNIDYDAVTLLVVLAAVAGTDDLELGKQVHGIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMISSCAQSSLEEESVNLFIDLLHEGLKPDHFTLASVLRACSSLIDGLNISRQIHVHALKTGNIADSFVATTLIDVYSKSGKMEEAEFLFQNKDDLDLACWNAMMFGYIIGNDGKKALELFSLIHKSGEKSDQITLATAAKACGCLVLLDQGKQIHAHAIKAGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDPFVGTSLVDMYAKCGNIEDAYRLFKKMNVRNIALWNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILSACSHAGLTSEAYEYLHSMPNDYGIEPEIEHYSCLVDALGRAGLVQEADKVIETMPFKASASINRALLGACRIQGDVETGKRVAARLFALEPFDSAAYVLLSNIYAAANRWDDVTDARKMMKRKNVKKDPGFSWIDVKNMLHLFVVDDRSHPQADIIYDKVEEMMKTIREDGYVPDTEFVLLDVEDEEKERSLYYHSEKLAIAYGLISTPASTTIRVIKNLRVCGDCHNAIKYISKVFEREIVLRDANRFHHFRDGVCSCGDYW* 1003
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0199 1002 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 214 248 IPR002885 -
Vvi4g0199 1002 Pfam DYW family of nucleic acid deaminases 910 1002 IPR032867 GO:0008270
Vvi4g0199 1002 Pfam E motif 814 874 IPR046848 -
Vvi4g0199 1002 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 183 213 IPR002885 -
Vvi4g0199 1002 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 444 939 IPR046960 GO:0003723|GO:0009451
Vvi4g0199 1002 FunFam Pentatricopeptide repeat-containing protein chloroplastic 654 748 - -
Vvi4g0199 1002 Gene3D Tetratricopeptide repeat domain 643 758 IPR011990 GO:0005515
Vvi4g0199 1002 Gene3D Tetratricopeptide repeat domain 759 930 IPR011990 GO:0005515
Vvi4g0199 1002 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 594 628 IPR002885 -
Vvi4g0199 1002 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 664 694 IPR002885 -
Vvi4g0199 1002 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 391 425 IPR002885 -
Vvi4g0199 1002 FunFam Pentatricopeptide repeat-containing protein At4g33170 546 653 - -
Vvi4g0199 1002 Gene3D Tetratricopeptide repeat domain 540 642 IPR011990 GO:0005515
Vvi4g0199 1002 Gene3D Tetratricopeptide repeat domain 292 444 IPR011990 GO:0005515
Vvi4g0199 1002 Gene3D Tetratricopeptide repeat domain 123 288 IPR011990 GO:0005515
Vvi4g0199 1002 FunFam Pentatricopeptide repeat-containing protein At4g33170 293 442 - -
Vvi4g0199 1002 Gene3D Tetratricopeptide repeat domain 445 539 IPR011990 GO:0005515
Vvi4g0199 1002 Pfam PPR repeat 467 487 IPR002885 -
Vvi4g0199 1002 Pfam PPR repeat 769 793 IPR002885 -
Vvi4g0199 1002 Pfam PPR repeat 365 389 IPR002885 -
Vvi4g0199 1002 Pfam PPR repeat 496 524 IPR002885 -
Vvi4g0199 1002 Pfam PPR repeat 393 422 IPR002885 -
Vvi4g0199 1002 FunFam Pentatricopeptide (PPR) repeat-containing protein 758 921 - -
Vvi4g0199 1002 FunFam Pentatricopeptide repeat-containing protein At3g58590 446 545 - -
Vvi4g0199 1002 FunFam Pentatricopeptide repeat-containing protein 162 288 - -
Vvi4g0199 1002 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 695 729 IPR002885 -
Vvi4g0199 1002 NCBIfam pentatricopeptide repeat 669 695 IPR002885 -
Vvi4g0199 1002 NCBIfam pentatricopeptide repeat 698 730 IPR002885 -
Vvi4g0199 1002 NCBIfam pentatricopeptide repeat 216 250 IPR002885 -
Vvi4g0199 1002 NCBIfam pentatricopeptide repeat 596 630 IPR002885 -
Vvi4g0199 1002 SUPERFAMILY TPR-like 192 855 IPR011990 GO:0005515
Vvi4g0199 1002 Pfam PPR repeat family 695 742 IPR002885 -
Vvi4g0199 1002 Pfam PPR repeat family 213 260 IPR002885 -
Vvi4g0199 1002 Pfam PPR repeat family 593 639 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0199 Vvi-Chr4 1723557 1726565 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0199 302 793 Glycoside Hydrolase AT3G49170 27.833 1.34e-51 194
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0199 - - vvi:100267901 1978.76