Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0197 ATGAGCTTGTCGAAGAAAGGGAACCCTATTAACAACATAAAGCTGGATTCGACTGCTAAGGTTACAACTTTGAATCCAAATGCAGCAGAATTTGTTCCATTCGCCCTCAGGTCATCATCTGGAAGCACCAGCACTGGAGATGCATCAGCAAGGTTCACTCCTTCTGGGACACTTGGTAAAGCAAAGCTAGATCGATCAGAATCCTCTATTTCTAATAATTCTGATGAAGAGGCCCACCAATACTGGCGTTGTCAGCTCCCTGATGATATTACTCCCGACTTTAAGGTCATGGGAGAAGATGAATCTCAGGCACTGGGGGGTCTCTCTTTGGCTGGTTTATCCTTACATGATAGCACTGAAACCTCGAGGTTCTCTGCTGGAAGTGGCTATATATTGAATGAGCAGCAGGAGTTATCGCCACATCATGTTAACGGGAACAGCTTCACTGACAAGATGAGATATTCTGCTTCACCCTATGGGGAAGATCCTTCTTCAGCCACTTTTCTGCATTTGCCAAATAAGCCCTGGGATAAGCAAATTGTGCACGGTGATCAGCTTCTTAGCAATGGTAGAGAGGGAACTCCATACAATGGAAATTCTAGACATGGATTCGTAAATGATATGTTGAATGAACATGCAATGGTGGATGAAACTGACATGAACCCTTTAGAGTTTTTGGCTTTGCAATTTCCTGGTTTTGCTGCTGAGAGCCTTACAGAGGTGTACTTCGCTAATGAATGCGACTTGAACATGACTATTGAGATGCTTACTCAGCTTGAGCTTCAAGTCGATGGTGGTTTCAGTCAGAACATGAACTCAAAGACCTTGTCAGCTCCAAATCTTAGTGGACTGGATTTTCCTTCACTTCCAGTTCCGGATGGTCAGAATGGTTTACCAAAATATGCTGGCGATGATATACAACAAGGTGTCAATCCATATCGATCTTCTGACAAGGACAATCTGCTTATGTTCAAATCCAACTCTTCAATCCCATCAAGAGGTGCTACAGATTTTGCTTCAGCAGTCAGGAAATTGGCAACCCAGGATTCTGGCATATGGAAATTTGATAGAAATGGCACTGCTGATGTCAATGTTGGCTCAAGCAGAAGTTCACATGTTTTGGCTAGTTCTTACAATAGTGGACATGGGAGAGGCACTTATGGTGATAGGTTGCAAAATCGTGGTTCAGCTCGAGTTGCTCCTGCTTGGGTTGAAACTGGAGAAGCAGTGGCAAATATGTATTCTGAGCTGCGGGAAGAAGCTCGTGACCATGCACGCCTACGTAATGCATATTTTGAACAGGCTCAACAGGCTTACCTTATTGGCAATAAGGCACTAGCTAAGGAACTGAGCCTTAAAGGGAAGCTGCACAGCATTCATATGAAGGCAGCTCATGGAAAAGCTCAAGAAGCTATCTATCGTCAGAGGAACCCAGTTAGCCCAGAGCTACAGGGAAACGCACGAGGAGAGAGGATGATAGATCTGCATGGGCTGCATGTCAGTGAAGCCATTCATGTGCTGAAGCATGAGCTGAATGTATTGAGGAGCACAGCGAGGTCAGCAGATCAGCGTCTGCAAGTTTATATATGTGTTGGAACGGGCCATCACACCAGGGGCTCTCGAACCCCTGCAAGACTTCCAGTTGCTGTACAACGCTACCTGCTTGAGGAGGAGGGTCTTGACTACACCGAGCCGCAGGCAGGGCTGCTTCGAGTTGTGATATATTGA 1728 0.456 MSLSKKGNPINNIKLDSTAKVTTLNPNAAEFVPFALRSSSGSTSTGDASARFTPSGTLGKAKLDRSESSISNNSDEEAHQYWRCQLPDDITPDFKVMGEDESQALGGLSLAGLSLHDSTETSRFSAGSGYILNEQQELSPHHVNGNSFTDKMRYSASPYGEDPSSATFLHLPNKPWDKQIVHGDQLLSNGREGTPYNGNSRHGFVNDMLNEHAMVDETDMNPLEFLALQFPGFAAESLTEVYFANECDLNMTIEMLTQLELQVDGGFSQNMNSKTLSAPNLSGLDFPSLPVPDGQNGLPKYAGDDIQQGVNPYRSSDKDNLLMFKSNSSIPSRGATDFASAVRKLATQDSGIWKFDRNGTADVNVGSSRSSHVLASSYNSGHGRGTYGDRLQNRGSARVAPAWVETGEAVANMYSELREEARDHARLRNAYFEQAQQAYLIGNKALAKELSLKGKLHSIHMKAAHGKAQEAIYRQRNPVSPELQGNARGERMIDLHGLHVSEAIHVLKHELNVLRSTARSADQRLQVYICVGTGHHTRGSRTPARLPVAVQRYLLEEEGLDYTEPQAGLLRVVIY* 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0197 575 MobiDBLite consensus disorder prediction 38 77 - -
Vvi4g0197 575 SMART DUF1771_2 413 478 IPR013899 -
Vvi4g0197 575 Pfam Domain of unknown function (DUF1771) 414 477 IPR013899 -
Vvi4g0197 575 SUPERFAMILY SMR domain-like 491 573 IPR036063 -
Vvi4g0197 575 ProSiteProfiles Smr domain profile. 493 575 IPR002625 -
Vvi4g0197 575 SMART SMR_2 490 575 IPR002625 -
Vvi4g0197 575 CDD CUE_CID7_like 221 262 IPR041806 -
Vvi4g0197 575 MobiDBLite consensus disorder prediction 62 77 - -
Vvi4g0197 575 PANTHER POLYADENYLATE-BINDING PROTEIN-INTERACTING PROTEIN 7 1 575 - -
Vvi4g0197 575 Pfam Smr domain 493 560 IPR002625 -
Vvi4g0197 575 Gene3D - 461 574 IPR036063 -
Vvi4g0197 575 MobiDBLite consensus disorder prediction 38 52 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0197 Vvi-Chr4 1717151 1721410 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0197 - - vvi:100267901 1133.24