Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0193 ATGGTAGCCTCCTGTCTCAGTCCCACCTCCCTGTACGGAGGCTACCTCCGCCGCTGTTTCACCGCATCGGGGTTGTCCTCGCAAACCATTGATATCGACCACCAAACGAGTATCCACTTCTGGGGCCCCAACACAGCCTCCCATAAACCTGTACTACTTCTGATTCACGGGTTCGGGCCAGTCTGCCTTTGGCAGTGGCGCCGTCAGGTACAGTATTTCTGTGCGGACTTCGATGTCTACGTGCCTGACCTCATCTTCTTCGGCGACTCCACCACCACGTCGTCGGACCGGACAGAGGTTTTTCAGGCGGTTTCGATCGGAAAACTGCTGGAGAAGGTGGGAATTGAAAGGTACGCTGTAATGGGGACGAGCTACGGCGGCTTCGTTGCGTACCACATGGCTTATATGTGGCCGGAGAGGGTGGAGAAGGTGGTGATAGCGAGCTCGGCGGTGAATTTGATTAGGAGAGATAACGAGGAGCTGTTGCAGAGGGCGAAATTGAAGGAGATTGAGGATCTGATGCTGCCGCGGACGGCGGAGCAGCTCAGGACGTTGACTTCTCTGGCGGTGTTCAAGCGTTTACCGACGATTCCGAATTTCTTGTGGAATGACATTATCGACAAGCTATACTCTGACAATAGAGAGGAAAAGAAGGGACTTTTGAAGGGATTAACACTCGGACGCGAAGATACACCAAACATATCTCCTCTTCAACAGGAGGTGTTGATCATATGGGGAGACCATGACCAAATATTTCCCTTGGGAAAGGCTATTGAACTCAAAGAGGTTCTGGGAGAGAAGGCGAAGCTGGAAGTAATGAAGAAGACGGCACATATGCCCCAAGTTGAATTCCCGGAACGTTTCAATGCCATTGTCAAAAACTTCTTGTGTGCCTGA 897 0.5173 MVASCLSPTSLYGGYLRRCFTASGLSSQTIDIDHQTSIHFWGPNTASHKPVLLLIHGFGPVCLWQWRRQVQYFCADFDVYVPDLIFFGDSTTTSSDRTEVFQAVSIGKLLEKVGIERYAVMGTSYGGFVAYHMAYMWPERVEKVVIASSAVNLIRRDNEELLQRAKLKEIEDLMLPRTAEQLRTLTSLAVFKRLPTIPNFLWNDIIDKLYSDNREEKKGLLKGLTLGREDTPNISPLQQEVLIIWGDHDQIFPLGKAIELKEVLGEKAKLEVMKKTAHMPQVEFPERFNAIVKNFLCA* 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0193 298 PANTHER SI:DKEY-122A22.2 10 296 - -
Vvi4g0193 298 Gene3D alpha/beta hydrolase 17 298 IPR029058 -
Vvi4g0193 298 PRINTS Alpha/beta hydrolase fold signature 76 91 IPR000073 -
Vvi4g0193 298 PRINTS Alpha/beta hydrolase fold signature 241 255 IPR000073 -
Vvi4g0193 298 PRINTS Alpha/beta hydrolase fold signature 120 133 IPR000073 -
Vvi4g0193 298 PRINTS Alpha/beta hydrolase fold signature 134 147 IPR000073 -
Vvi4g0193 298 Pfam alpha/beta hydrolase fold 50 283 IPR000073 -
Vvi4g0193 298 SUPERFAMILY alpha/beta-Hydrolases 26 296 IPR029058 -
Vvi4g0193 298 PRINTS Epoxide hydrolase signature 273 295 IPR000639 GO:0003824
Vvi4g0193 298 PRINTS Epoxide hydrolase signature 76 91 IPR000639 GO:0003824
Vvi4g0193 298 PRINTS Epoxide hydrolase signature 134 147 IPR000639 GO:0003824
Vvi4g0193 298 PRINTS Epoxide hydrolase signature 120 133 IPR000639 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0193 Vvi-Chr4 1670292 1672549 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0193 50 152 Acyl Lipid Metabolism Gene Families AT4G02340 31.132 4.00e-09 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0193 - - vvi:100266471 596.275