Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0192 ATGCTTTCTATTGTGATAGAAAGAATGGGTTCAATCTGCAGCAGACACAAACATTACCATGAAGCAGATGCTGAGGAGAATGCACAGGCTGCAGAAATAGAAAGGAGGATTGAGCAAGAAACAAAAGCAGAAAAGCATATTCAGAAACTTCTACTGCTTGGTGCTGGAGAGTCGGGGAAGTCCACAATTTTTAAGCAGATAAAACTTTTGTTTCAAACTGGCTTTGACGAGGCAGAGCTAAAGAGCTATATCTCAGTCGTCCATGCCAATGTATATCAGACAATAAAAGTTTTGTATGATGGGTCAAGGGAATTGGCTCAAAATACAACGGATTCCTCAAAGTATGCTTTGTCCATTGAAAATAAGGATATAGGAGAAAAATTATCAGAAATTGGAGGCAGGTTAGATTATCCACGTCTCACAAGAGAGCTTGCAAATGAGATAGAGACGCTGTGGAAAGATGCTGCAATTCAGGAAACTTATTCTCGTGGTAATGAACTTCAAGTGCCGGATTGTGCACATTATTTTATGGATAATTTGGAGAGATTGTCTGATGCAAATTATGTTCCAACAAAGGAGGATGTTCTCTATGCAAGAATTCGTACAACAGGTGTCGTAGAAATCCAGTTCAGTCCTGTTGGAGAGAATAAGAAAAGTGGCGAAGTATATAGATTATTCGATGTTGGAGGCCAGAGAAATGAAAGAAGGAAATGGATCCATTTATTTGAAGGTGTTACAGCTGTAATTTTTTGTGCTGCTATTAGCGAGTATGACCAGACTCTCTTCGAGGATGAAAACAAGAACCGAATGATGGAGACAAAGGAACTCTTTGAGTGGGTCCTGAAGCAACCATGTTTTCAGAAAACATCCTTCATGCTGTTTTTAAACAAGTTTGATATATTTGAGAAGAAAGTTATAAAAGTGCCACTAAATGTATGTGAATGGTTCAAAGACTACCAACCAGTTTCAACAGGAAAACAAGAAATTGAGCATGCATACGAGTTTGTTAAGAAGAAATTTGAAGAGTTGTATTTTCAGAGCACTGCTCCTGATTGTGTGGACCGCGTCTTTAAGATATACAGGACCACTGCCCTTGATCAAAAGCTTGTGAAGAAAACCTTCAAGCTGGTAGATGAGACTTTGAGAAGGAGAAATCTCTTTGAGGCTGGCTTGTTGTGA 1179 0.3902 MLSIVIERMGSICSRHKHYHEADAEENAQAAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVVHANVYQTIKVLYDGSRELAQNTTDSSKYALSIENKDIGEKLSEIGGRLDYPRLTRELANEIETLWKDAAIQETYSRGNELQVPDCAHYFMDNLERLSDANYVPTKEDVLYARIRTTGVVEIQFSPVGENKKSGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDENKNRMMETKELFEWVLKQPCFQKTSFMLFLNKFDIFEKKVIKVPLNVCEWFKDYQPVSTGKQEIEHAYEFVKKKFEELYFQSTAPDCVDRVFKIYRTTALDQKLVKKTFKLVDETLRRRNLFEAGLL* 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0192 392 CDD G-alpha 48 386 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Vvi4g0192 392 FunFam Guanine nucleotide-binding protein alpha-1 subunit 76 201 - -
Vvi4g0192 392 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 44 389 IPR027417 -
Vvi4g0192 392 FunFam Guanine nucleotide-binding protein alpha-1 subunit 186 379 - -
Vvi4g0192 392 Coils Coil 21 41 - -
Vvi4g0192 392 PRINTS Plant G protein alpha subunit signature 278 289 IPR002976 GO:0001664|GO:0003924|GO:0005834|GO:0007188|GO:0031683
Vvi4g0192 392 PRINTS Plant G protein alpha subunit signature 35 44 IPR002976 GO:0001664|GO:0003924|GO:0005834|GO:0007188|GO:0031683
Vvi4g0192 392 PRINTS Plant G protein alpha subunit signature 85 98 IPR002976 GO:0001664|GO:0003924|GO:0005834|GO:0007188|GO:0031683
Vvi4g0192 392 PRINTS Plant G protein alpha subunit signature 100 114 IPR002976 GO:0001664|GO:0003924|GO:0005834|GO:0007188|GO:0031683
Vvi4g0192 392 PRINTS Plant G protein alpha subunit signature 344 356 IPR002976 GO:0001664|GO:0003924|GO:0005834|GO:0007188|GO:0031683
Vvi4g0192 392 PRINTS Plant G protein alpha subunit signature 124 138 IPR002976 GO:0001664|GO:0003924|GO:0005834|GO:0007188|GO:0031683
Vvi4g0192 392 PRINTS Plant G protein alpha subunit signature 208 223 IPR002976 GO:0001664|GO:0003924|GO:0005834|GO:0007188|GO:0031683
Vvi4g0192 392 PRINTS Plant G protein alpha subunit signature 327 342 IPR002976 GO:0001664|GO:0003924|GO:0005834|GO:0007188|GO:0031683
Vvi4g0192 392 Pfam G-protein alpha subunit 30 380 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Vvi4g0192 392 PRINTS Alpha G protein (transducin) signature 49 64 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Vvi4g0192 392 PRINTS Alpha G protein (transducin) signature 245 273 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Vvi4g0192 392 PRINTS Alpha G protein (transducin) signature 223 240 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Vvi4g0192 392 PRINTS Alpha G protein (transducin) signature 188 210 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Vvi4g0192 392 PRINTS Alpha G protein (transducin) signature 291 300 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Vvi4g0192 392 PANTHER GTP-BINDING PROTEIN ALPHA SUBUNIT 12 388 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Vvi4g0192 392 ProSiteProfiles G-alpha domain profile. 46 392 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Vvi4g0192 392 Gene3D - 76 201 IPR011025 GO:0007165
Vvi4g0192 392 Gene3D - 49 380 IPR027417 -
Vvi4g0192 392 SMART galpha_1 27 391 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Vvi4g0192 392 SUPERFAMILY Transducin (alpha subunit), insertion domain 75 200 IPR011025 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0192 Vvi-Chr4 1659221 1665844 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0192 K19729 - vvi:100244127 764.222