Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0190 ATGGGGATGTTTGTGAGAGCATCTGCAGCCATTGCTGTGGCATGGTTGGCTTTGTTTGAAGGATTTTTCGGGTTAGTTAATGGCAGTGATATTAACTACAAGGATGCTCTGACCAAGTCCCTTATTTTCCTCGAGGCACAGAGATCAGGGAAGCTTCCTGCCAATAATAGGCTACCTTGGAGAGGAGACTCGGCCCTTGAGGATGGAAAACTCGTAAATGCGGATCTTGTTGGAGGATATTATGATGCAGGAGACAATGTGAAGTATGGGCTTCCCATGGCTTTCACTGTTACCACTCTTTCATGGTCAGCTATCTTTTATGAATCAGAGTTGAAAGCAACTGGTGAGCTTGAAAATATGAGAGATGCGATCAAGTGGGGCACAGATTATTTTCTCAAAGCGTATCCTCGGAAAAATAGATTGTATGTGCAGGTGGGAGACCCGGTACAAGATCATCAATGTTGGATGAGACCCGAAAACATGGAGACGCCAAGGACAGTGTTGATGATAGATGATAAAATGCCTGGAACAGAGATTGCAGCTGAAACTTCTGCTGCCATGGCTTCTTCTTCTATTGTATTTAGAGGTGTTGATCGTGCCTATGCTCGTAGGCTCCTCAACAAAGCCAAACTGCTTTTTGAGTTTGCCAAAGCACATAAAGGAACTTATGATGGAGAATGCCCTTTCTATTGCTCCTTCTCAGGCTACAATGATGAGCTATTGTGGGCAGCAACATGGCTATACATTGCCACAAGGAAGCCAAAATACTTGAAATACATACAGGAAGAATCCATAAGTGCAAGTGTAGCTGAGTTTAGTTGGGACCTTAAGTATGCTGGAGCCCAAATCCTCCTCTCTAAGTTTTATTTTGAAGGGGAGAAGGGCTTAGAGACATTCAAGAACCAAGCTGACAGTTTCATATGTTCAGTGCTTCCTGATAGCCCCTACCACCAGATTTACCTCACTCCAGGTGGCATGGTACATTTGAGAGATGGTGCCAACACCCAGTATGTTACGGGGACAGCCCATTTGTTTGCTGTGTACAGCAATATACTTGCTCAATTCAACCAGAAGGTTGTATGCGGTGGTCAACAATTTGACCATACTCACCTCATGGCCTTTGCCAAACAACAGATGGATTATTTACTAGGAAAAAACCCGGAAGGAAGATCATACATGGTTGGATTTGGAAACAACCCCCCAACACAAGCACACCATAGGGGAGCCTCAGTTCCAAAACTGCCTCAAGGCTCCACAGTGAGTTGTGCCATGAGCTTTGTGTATTGGTTCAATAAGAACGACGCAAACCCTAACGAGCTAACGGGTGCCATTCTCGGTGGCCCCGACCGCAACGATAACTTCGACGATAAACGTTGGGACTCATCCAAGACCGAGCCATGCACGTACGTGAATTCGCTTGCGGTTGGTGTGCTATCACACTTGGCCATGCACAACGCTTAA 1461 0.4559 MGMFVRASAAIAVAWLALFEGFFGLVNGSDINYKDALTKSLIFLEAQRSGKLPANNRLPWRGDSALEDGKLVNADLVGGYYDAGDNVKYGLPMAFTVTTLSWSAIFYESELKATGELENMRDAIKWGTDYFLKAYPRKNRLYVQVGDPVQDHQCWMRPENMETPRTVLMIDDKMPGTEIAAETSAAMASSSIVFRGVDRAYARRLLNKAKLLFEFAKAHKGTYDGECPFYCSFSGYNDELLWAATWLYIATRKPKYLKYIQEESISASVAEFSWDLKYAGAQILLSKFYFEGEKGLETFKNQADSFICSVLPDSPYHQIYLTPGGMVHLRDGANTQYVTGTAHLFAVYSNILAQFNQKVVCGGQQFDHTHLMAFAKQQMDYLLGKNPEGRSYMVGFGNNPPTQAHHRGASVPKLPQGSTVSCAMSFVYWFNKNDANPNELTGAILGGPDRNDNFDDKRWDSSKTEPCTYVNSLAVGVLSHLAMHNA* 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0190 486 Gene3D - 28 486 IPR012341 GO:0005975
Vvi4g0190 486 Pfam Glycosyl hydrolase family 9 33 478 IPR001701 GO:0004553|GO:0005975
Vvi4g0190 486 PANTHER ENDO-1,4-BETA-GLUCANASE 23 482 - -
Vvi4g0190 486 FunFam Endoglucanase 29 486 - -
Vvi4g0190 486 SUPERFAMILY Six-hairpin glycosidases 31 484 IPR008928 GO:0005975
Vvi4g0190 486 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 381 407 IPR018221 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0190 Vvi-Chr4 1643455 1646409 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0190 17 482 Glycoside Hydrolase AT3G43860 73.673 0.0 724
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0190 K01179 - vvi:100243909 995.727