Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0189 ATGAGAATGTGTATTAGACGAACATCTCCACCCATTTTCATATCATACTTGGCTCTTTTCTCCCCATTTTTCATACCCATTATTAATGGTGGGGACTTCAACTACAAAGAAGCTCTCACCAAGTCCATTATTTTCTTGGAGGCACAGAGGTCCGGAAAGCTTCCTCCAACCTCTAGGCTTGCATGGAGAGGAAACTCGGCTCTTGACGACGGAAAACTCGCAAATGTGGACCTTGTGGGTGGATACTATGATGCGGGTGACAATGTGAAATTTGGGCTACCAATGGCTTTCACTATTACGACTTTATCGTGGGCAGCTATTTTTTATGAAGCGGAGTTAGGAGCAAGTGAAGAGCTTGAGAATGTCCGGGCCGCTATCAAGTGGGGCACTGACTATTTTCTCAAGGCATCTTCTCAAAAAAATCGGTTGTATGTGCAGGTGGGAGACCCCGTGGAAGATCACGAGTGTTGGATTAGGCCAGAGAACATGGAGACAAGGAGGAGTGTATTAGTGGTGGATGAGAACAGGCCTGGAACAGAGATTGCAGCTGAAACTTCCGCAGCCATGGCTTCTTCTTCCATCGTCTTTAGAGGCTCTGATCACCTCTACTCTCGTCGTCTCCTCAATAAAGCCAAAATGCTTTTCCAGTTTGCTACATTATTTAATGGAAGCTACGATGGAGCATGCCCCTTCTATTGCTCCTACTCGGGCTATAATGATGAGTTACTATGGGCAGCAACATGGCTATACATTGCCACAAAGAGGCCAAAGTACTTGCAGTATATAGAAGAAGAATCCATCAGTGAAAATGTAAATGAGTTCAGCTGGGATCTTAAATATGGTGGAGCCCAAATCCTCTTATCTAAGTTTTATTTTGAAGGGGAGAAGAGTTTGGAGAAATTCAAGAACCAAGCAGATAGTTTTGTTTGCTCTGTGCTTCCTGATAGTCCCTCTCACCACATTCACATCACCCCAGGCGGCATGGTTCATGTAAGAGATGGTGCCAATAGCCAATATGTTACAAGCACAGCTCTCTTGTTCAGCATCTACAGTGATCTACTTGCCCAATTCAATCAAAATGTTACATGCAATAATCAGCAATTTTATTCGACTCACCTCATGGCCTTCGCGAAACAACAGATGGATTATCTACTAGGAGAAAACCCAGAAGGAAGATCGTACATGGTGGGCTTCGGAAACAATCCACCCACGCACGCACACCATAGAGGGTCTTCAGTTCCAAAACTGCCTGAAAACTACACAGTAAACTGTGGAATGAGCTTCGTCTACTGGTTCCATAAAAATGAACCAAACCCTAATATGCTCACCGGCGCCATTGTTGGTGGCCCTGACCGCAACGACACCTTCCTTGACCTGCGTTGGCAATCTCCCATGACCGAGCCATGCACCTATGTCAACTCCCTTGCAGTCGGTGTTCTAGCAAAGTTAGCTGCTGCCCACACTCTTTAG 1470 0.4551 MRMCIRRTSPPIFISYLALFSPFFIPIINGGDFNYKEALTKSIIFLEAQRSGKLPPTSRLAWRGNSALDDGKLANVDLVGGYYDAGDNVKFGLPMAFTITTLSWAAIFYEAELGASEELENVRAAIKWGTDYFLKASSQKNRLYVQVGDPVEDHECWIRPENMETRRSVLVVDENRPGTEIAAETSAAMASSSIVFRGSDHLYSRRLLNKAKMLFQFATLFNGSYDGACPFYCSYSGYNDELLWAATWLYIATKRPKYLQYIEEESISENVNEFSWDLKYGGAQILLSKFYFEGEKSLEKFKNQADSFVCSVLPDSPSHHIHITPGGMVHVRDGANSQYVTSTALLFSIYSDLLAQFNQNVTCNNQQFYSTHLMAFAKQQMDYLLGENPEGRSYMVGFGNNPPTHAHHRGSSVPKLPENYTVNCGMSFVYWFHKNEPNPNMLTGAIVGGPDRNDTFLDLRWQSPMTEPCTYVNSLAVGVLAKLAAAHTL* 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0189 489 Gene3D - 30 488 IPR012341 GO:0005975
Vvi4g0189 489 FunFam Endoglucanase 31 488 - -
Vvi4g0189 489 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 383 409 IPR018221 -
Vvi4g0189 489 PANTHER ENDO-1,4-BETA-GLUCANASE 32 485 - -
Vvi4g0189 489 SUPERFAMILY Six-hairpin glycosidases 31 485 IPR008928 GO:0005975
Vvi4g0189 489 Pfam Glycosyl hydrolase family 9 35 480 IPR001701 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0189 Vvi-Chr4 1639516 1642454 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0189 17 486 Glycoside Hydrolase AT3G43860 68.298 0.0 670
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0189 K01179 - vvi:100249062 995.727