Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0178 ATGAAGATTTGGTGCTGCTTTGGGTTGGGAGAAGACGAAGAAGAAGTGAGGGGAACGATGAGAGAGGGGATGTTCGGAAATGAGAACGATGATGAGTCTGAAGGGAAGGAATTAGGGTTTTTGCTTGGTGGTCAGATGAGTGATCTTGAAGAGAACGAGATGGTCGTCGGCAGCGGCGGTGGCGGTGGCGGTGGAGGTGGTGACCAGTGGCAGCTTGGGGTGGGGGGTTGGAGGCAGTTTGATCAGTTTGCGTCGACTAGCGGACAAGGGATTGGGGACAACAGCGAGGCGTTTTTTCCTGAGAAATGTGATCGGCCGGAAGGGTCGGAGAGGGATGACTGCGATTCTGATGATCGCGATTCTTGGGATGTGCACCATAAGCGGGCCAAAGTTCATTCGTATTCCCAGGGTTGCACTTATGCAATAACTGCTATGCCTTTGGAAGCTGGAAATTCTAGTTCGTCCACAGACAGGGATTATAATGTCAGTCAGAGTCCAATTCCTTTTAATAATGAGATCCTGCGTCTCACCTCAATGTCGAATGATAGTGATGATGAGAATCCACTTGATTCTAATGATGGGAGAGATGAGGAAGGAGATGGATTTAGTACTTCAAAAATGGAAGATTTAGAAGTTCGGATGGATCTTACAGATGACTTATTGCACATGGTTTTCTCTTTCTTGGACCATATTAATCTTTGTCGAGCTGCTATAGTCTGCAAGCAGTGGCGAGCTGGTAGTTCTCATGAAGACTTCTGGAGGTGTCTGAATTTTGAAAATCGGAACATATCTGAAGAACAGTTTGAGGATATGTGTCGTCGATATCCGAATGCCACTGAAGTGAATATTTTTGGTGCTCCTTCAATTCACTCGCTGGTTATGACAGCAATGTCTTCTTTAAGAAATCTGGAGACCTTAACCTTGGGGAAAGGAACATTAGGGGATACATTTTTCCAAGCCTTGGCTGATTGTTATATGTTGAAGAGACTGCTTGTTAATGATGCCACTCTTGGTAATGGTATCCAGGAGATACCGATATACCATGATAGATTGCATCATCTTCAAATTACAAAATGTCGTGTACTCCGTATATCTGTCAGGTGCCCCCAGCTTGAAACCTTGTCTCTGAAGCGCAGCAGTATGGCACATGCTGTGCTTAATTGCCCTCTTTTGCATGACCTTGATATAGGCTCTTGCCACAAGCTTACAGATGCTGCAATTCGCTCAGCAGCAACATCATGCCCTCTATTGGAATCTTTGGATATGTCTAATTGTTCATGTGTTAGTGATGATACCCTTCGTGAAATAGCCCTCACTTGTGCTAATCTTCATATTCTTGATGCATCATACTGCCCAAACATCTCACTGGAGTCTGTAAGGCTGTCAATGTTGACAGTTCTTAAGCTTCACAGTTGTGAGGGCATAACCTCAGCTTCCATGGCTGCAATATCGCACAGTTATATGTTGGAGGTTTTGGAGCTTGATAATTGCAGCTTATTGACTTCAGTGTCCCTGGAACTTCCTCGTTTGCAAAATATTAGACTAGTGCATTGTCGCAAGTTTGTTGATTTAAATTTACGAAGTATCATGTTGTCATCTATGACTGTGTCCAATTGTCCTGCACTCCACCGAATCAATGTCACTTCAAATTCACTTCAGAAATTAGTGTTGCAAAAGCAAGCAAGTTTAACTACATTAGCTCTGCAATGCCAATATTTGCAAGAAGTGGACCTCACAGATTGTGAATCTCTCACAAACTCCATTTGTGACGTTTTTAGTGATGATGGTGGATGCCCTATGCTAAAATCATTAGTTCTAGATAACTGCGAGTGCTTGACAGCAGTGGGATTCCGCAGTACCTCCTTAGTCAGTCTTTCACTGGTTGGTTGTCGTGCCATTACTTCTCTTGAACTCGTATGCCCCTATCTTGAGCAAGTTCATTTAGATGGTTGTGATCATCTTGAAAGAGCATCATTTCGCCCTGTTGGGCTTCGGTCATTGAACTTGGGAATTTGTCCCAAATTGAGTGCACTCCACATTGAAGCACCATCCATGGTTCAACTTGAGTTGAAAGGATGCGGTGGACTATCTGAAGCATCCATTAACTGTCCTATGTTGACGTCTCTAGATGCTTCCTTTTGCAGCAAACTCAAGGATGATTGCTTGTCTGCAACAGCTGCTTCATGCCCTTTCATTGAGTCGTTGATACTGATGTCTTGCCCATCTGTGGGTTATGAAGGACTCTCCTCTTTGCGCTTGCTGCCGCATTTAACCTTGCTTGATCTGTCATACACTTTTTTGATGAACTTGCAGCCAGTTTTTGAATCCTGCTTGCAGCTAAAGGTACTGAAATTACAAGCATGCAAGTATCTCACTGACTCATCACTGGAAGCTCTTTATAAAGAAGGTGCTCTCCCAGCTCTATGCGAGCTGGACTTATCATATGGGGCCCTCTGTCAGTCGGCTATCGAGGAGCTTCTTGCTTGTTGTACACATCTCACTCATGTGAGCTTGAATGGCTGCCTAAATATGCACGATCTGAATTGGGGTTTTAGCAGTGGTCCCATTTCTGAGTTGCCAAGCATTTATAACACATCTAGCTTGTCTTCTCACGGGGATGACCATGAGCTAATTGAGCAGCCTAATCGCTTACTGCAGAATCTTAACTGTGTTGGATGTCAGAATATTAAGAAAGTTCTCATTCCACCAATGGCACGCTGTACCCATTTGTCATCATTAAACCTCTCTCTTTCTGCAAATTTGAAGGAAGTTGATGTTGCTTGTTACAATCTTTGCTTTCTTAATTTGAGCAATTGCTCCTCCTTGGAAATTTTAAAGCTCGAGTGTCCGAGGTTAACCAGCCTCTTTCTTCAGTCTTGCAACATCACGGTAGAAGCAGTAGAAGCTGCCATATCTCAGTGCAACATGCTGGAGACCCTTGATATCCGCTTTTGTCCGAAGTTGTCCAATGCGAGTATGAAAACATTACGAGCAGTGTGCCCCAGTTTGAAGCGCATCTTCAGCAGCCTGTGA 3033 0.4408 MKIWCCFGLGEDEEEVRGTMREGMFGNENDDESEGKELGFLLGGQMSDLEENEMVVGSGGGGGGGGGDQWQLGVGGWRQFDQFASTSGQGIGDNSEAFFPEKCDRPEGSERDDCDSDDRDSWDVHHKRAKVHSYSQGCTYAITAMPLEAGNSSSSTDRDYNVSQSPIPFNNEILRLTSMSNDSDDENPLDSNDGRDEEGDGFSTSKMEDLEVRMDLTDDLLHMVFSFLDHINLCRAAIVCKQWRAGSSHEDFWRCLNFENRNISEEQFEDMCRRYPNATEVNIFGAPSIHSLVMTAMSSLRNLETLTLGKGTLGDTFFQALADCYMLKRLLVNDATLGNGIQEIPIYHDRLHHLQITKCRVLRISVRCPQLETLSLKRSSMAHAVLNCPLLHDLDIGSCHKLTDAAIRSAATSCPLLESLDMSNCSCVSDDTLREIALTCANLHILDASYCPNISLESVRLSMLTVLKLHSCEGITSASMAAISHSYMLEVLELDNCSLLTSVSLELPRLQNIRLVHCRKFVDLNLRSIMLSSMTVSNCPALHRINVTSNSLQKLVLQKQASLTTLALQCQYLQEVDLTDCESLTNSICDVFSDDGGCPMLKSLVLDNCECLTAVGFRSTSLVSLSLVGCRAITSLELVCPYLEQVHLDGCDHLERASFRPVGLRSLNLGICPKLSALHIEAPSMVQLELKGCGGLSEASINCPMLTSLDASFCSKLKDDCLSATAASCPFIESLILMSCPSVGYEGLSSLRLLPHLTLLDLSYTFLMNLQPVFESCLQLKVLKLQACKYLTDSSLEALYKEGALPALCELDLSYGALCQSAIEELLACCTHLTHVSLNGCLNMHDLNWGFSSGPISELPSIYNTSSLSSHGDDHELIEQPNRLLQNLNCVGCQNIKKVLIPPMARCTHLSSLNLSLSANLKEVDVACYNLCFLNLSNCSSLEILKLECPRLTSLFLQSCNITVEAVEAAISQCNMLETLDIRFCPKLSNASMKTLRAVCPSLKRIFSSL* 1011
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0178 1010 SUPERFAMILY RNI-like 237 456 - -
Vvi4g0178 1010 MobiDBLite consensus disorder prediction 179 206 - -
Vvi4g0178 1010 Gene3D Ribonuclease Inhibitor 459 530 IPR032675 -
Vvi4g0178 1010 Gene3D Ribonuclease Inhibitor 208 458 IPR032675 -
Vvi4g0178 1010 Gene3D Ribonuclease Inhibitor 861 1009 IPR032675 -
Vvi4g0178 1010 Pfam F-box-like 218 257 IPR001810 GO:0005515
Vvi4g0178 1010 SUPERFAMILY L domain-like 409 566 - -
Vvi4g0178 1010 SMART fbox_2 216 256 IPR001810 GO:0005515
Vvi4g0178 1010 MobiDBLite consensus disorder prediction 98 112 - -
Vvi4g0178 1010 MobiDBLite consensus disorder prediction 85 122 - -
Vvi4g0178 1010 FunFam F-box/LRR-repeat protein 15 536 662 - -
Vvi4g0178 1010 FunFam F-box/LRR-repeat protein 15 208 458 - -
Vvi4g0178 1010 Gene3D Ribonuclease Inhibitor 531 849 IPR032675 -
Vvi4g0178 1010 PANTHER OS10G0396666 PROTEIN 177 1009 - -
Vvi4g0178 1010 SUPERFAMILY L domain-like 663 1006 - -
Vvi4g0178 1010 SUPERFAMILY F-box domain 215 245 IPR036047 GO:0005515
Vvi4g0178 1010 SMART LRR_CC_2 777 802 IPR006553 -
Vvi4g0178 1010 SMART LRR_CC_2 461 486 IPR006553 -
Vvi4g0178 1010 SMART LRR_CC_2 949 973 IPR006553 -
Vvi4g0178 1010 SMART LRR_CC_2 414 439 IPR006553 -
Vvi4g0178 1010 SMART LRR_CC_2 729 754 IPR006553 -
Vvi4g0178 1010 SMART LRR_CC_2 570 594 IPR006553 -
Vvi4g0178 1010 SMART LRR_CC_2 640 665 IPR006553 -
Vvi4g0178 1010 SMART LRR_CC_2 300 324 IPR006553 -
Vvi4g0178 1010 SMART LRR_CC_2 974 999 IPR006553 -
Vvi4g0178 1010 SMART LRR_CC_2 507 532 IPR006553 -
Vvi4g0178 1010 SMART LRR_CC_2 703 728 IPR006553 -
Vvi4g0178 1010 SMART LRR_CC_2 388 413 IPR006553 -
Vvi4g0178 1010 SMART LRR_CC_2 598 625 IPR006553 -
Vvi4g0178 1010 FunFam F-box/LRR-repeat protein 15 770 855 - -
Vvi4g0178 1010 FunFam F-box/LRR-repeat protein 15 isoform C 866 1009 - -
Vvi4g0178 1010 SUPERFAMILY RNI-like 563 794 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0178 - - vvi:100262977 1963.35