Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0177 ATGATAGCGTGTTTGGAGCAGCGATTTTTGCCGGATAGTGAGGCGGAGACGAGAGCAGACGACGACGTTTCGAGTCTCTGCAAAGCGTTGGAGCTCAACGGGAGTATCGATTGTGGGTCTGTTGGGGTCGCCAGTAAGGATTTCGGAGGTCTGTATGCTGTGAAGCCTGTGGCTTTTATCAGGCCGTCAGGCGCTGACGACTTGGTGAGGGTGGTTAGCGCCGCCGCTCGGTCATCGAATCTGACGGTGGCGGCGAGAGGTAACGGCCACTCGATCAACGGTCAGGCGATGGCTGATCGAGGGCTGGTGATTGACATGAGAACCATGGAGGAGCGGATTGAGGTGGTGAGCTGTGGCGGCGCTGATTATGTCGACGTCTCCGGAGGGGCATTATGGGAAGATGTGTTGAAACGCTGCGTTTTGGGGTTCGGACTCGCGCCCAGGTCGTGGACCGACTACCTCGGGTTAACCGTCGGTGGCACGTTGTCTAACGCCGGCATTAGCGGCCAGGCCTTCCGTTACGGCCCTCAGACTTCGAACGTAACTGAGATGGAGGTCGTCACCGGAAAAGCCGAAACGCTGGTGTGCTCCGAAACCCAAAACCCAGAAATCTTCTTCGCGATTCTCGGTGGACTCGGCCAGTTCGGAATCATCACCAGAGCTAGGGTTTTGCTACAGCCAGCACCGGACATGGTGAGATGGATGAGGTTGGTGTACGCCGAGTTCGACGCGTTCTCGCGCGACGCTGAGTTTCTCGTGACTAGACCGGAGGGTGACTCGTTCGATTACGTGGAAGGTTTTGTCTTCGTCAACAGCTCCGACCCGGTTAACGGTTGGCCGTCAGTGCCACTGACTCCTGAGCAGCGGTTCAACTCCGGTCGAGTCCCTCGAACTGCTGGTTCGGTGCTGTACTGTATCGAAGTGGCTTTACACTACAAAAGTAGCGACCACGCCTCAACTGTTGATATGGCTGTAAGTCGGATGCTTGGACGGCTTGGATTTATCGAGGGCTTGGAGTTCCACGTGGACGTTGGTTACATGGAGTTCTTATTGCGGGTGAAGCGTGTAGAAGAAGATGCGAGGGCCAATGGCATTTGGGACGCGCCTCACCCTTGGTTGAACCTGCTCGTCTCTAAGAGGGACATCGCTGATTTTGATCGGACGGTGTTCAAGAAGATCTTGAGAGATGGGGTTGGTGGGCCCATGCTTGTCTACCCTCTGCTTCGAAGCAAGTGGGATGATCGAACCTCGGTGGTGATACCAGAAGGGGAAATCTTCTACCTAGTGGCATTGCTTCGGTTCGATCCTGCATATTCAAAGGACTCCGTCGTAGAAAAAATGGTTGCCCAGAACCAAGAAATCATACAGTGCTGTATGAAAAATGGGTTTGATTTCAAGTTGTATCTTCCTCATTATCAGTCGGAGGAAGGGTGGAAGCGACACTTTGGGAATCGGTGGACGAGGTTTGTGGAGAGGAAGGCGAGGTTTGATCCAATGGCCATCCTCGCTCCCGGCCAGAAGATCTTCTCCCGGAGCCGGCAACCCTAG 1548 0.5472 MIACLEQRFLPDSEAETRADDDVSSLCKALELNGSIDCGSVGVASKDFGGLYAVKPVAFIRPSGADDLVRVVSAAARSSNLTVAARGNGHSINGQAMADRGLVIDMRTMEERIEVVSCGGADYVDVSGGALWEDVLKRCVLGFGLAPRSWTDYLGLTVGGTLSNAGISGQAFRYGPQTSNVTEMEVVTGKAETLVCSETQNPEIFFAILGGLGQFGIITRARVLLQPAPDMVRWMRLVYAEFDAFSRDAEFLVTRPEGDSFDYVEGFVFVNSSDPVNGWPSVPLTPEQRFNSGRVPRTAGSVLYCIEVALHYKSSDHASTVDMAVSRMLGRLGFIEGLEFHVDVGYMEFLLRVKRVEEDARANGIWDAPHPWLNLLVSKRDIADFDRTVFKKILRDGVGGPMLVYPLLRSKWDDRTSVVIPEGEIFYLVALLRFDPAYSKDSVVEKMVAQNQEIIQCCMKNGFDFKLYLPHYQSEEGWKRHFGNRWTRFVERKARFDPMAILAPGQKIFSRSRQP* 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0177 515 ProSiteProfiles PCMH-type FAD-binding domain profile. 52 228 IPR016166 GO:0071949
Vvi4g0177 515 SUPERFAMILY FAD-linked oxidases, C-terminal domain 229 509 IPR016164 GO:0003824|GO:0050660
Vvi4g0177 515 Gene3D - 106 230 IPR016169 -
Vvi4g0177 515 Pfam Cytokinin dehydrogenase 1, FAD and cytokinin binding 229 509 IPR015345 GO:0009690|GO:0019139|GO:0050660
Vvi4g0177 515 Gene3D - 44 510 IPR016167 -
Vvi4g0177 515 PANTHER GULONOLACTONE OXIDASE 33 510 - -
Vvi4g0177 515 Pfam FAD binding domain 57 197 IPR006094 GO:0050660
Vvi4g0177 515 SUPERFAMILY FAD-binding/transporter-associated domain-like 37 227 IPR036318 GO:0050660
Vvi4g0177 515 Gene3D - 232 468 IPR016170 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0177 Vvi-Chr4 1498414 1501939 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0177 K00279 - vvi:100245801 1041.18