Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0167 ATGTCCGTACGTTTCAAATTCAGAAGCGCTGTGAGCTTCGACTCGGTCGACATAGAAGGTCGGCCCTCCATATCAGTTCGAGATCTCAGGTCGAAGATCGTTCGCCACAAGAATCTCGATATCTGCCATGACTTCGATCTCGTGTTCTCTGATGCCGTCACCGGTCAAGAATACGTTGATGAAAATTTTCAAATTCCAAGTGGTTCAAGTATAATTATTAAGAGAATACCTGCGGGATCAGTGCCTTCAGCAGCAAAGGCTTGCATTGATTCAATTAAGCATGTTGGGAGCAAGGACGCCAATCTTGTTCCTAAAATTGTGGAGATTGATGACTTTGATGACTTTGGGATTGACTTATGTCCCGTTCCTCAGCCATCCTTTTGTGACTCTGATCTTGATATTGATAAGATGAATTGCAGTGGTAGTGAGATCAAACCAAGTACAGTACCAAGATGCTCAAAGCCACCTGTGATAGTATGTCAAAAGCTTGAATCAAGTGACCTTAGTGAGGCTAGTCCAAGAGGTTCTACTCACAAAGTTCAAGGGAATGCTCCTCAGACAAAATCAAAACCTAAAGTTGAAGAACAGACAAAGTTAGAAAAAGTGGCTCATGCCAATCCTCAAGCCATTCAGAATGTTGATTTACCATCAGAGATGAAATGCTCTCTTTGCAACACATATTTCAAGAAGGCTGTGATGATACCATGCTGCCAGCATAGCTTTTGTGAGAAATGCATTCATCTAGTGCTGGTTGAGAAGGCACAATGTCCCAAGTGCTCTTCTACAAAATGCAGAGTAGAAGATCTGCTGCCAAATTTGTCCCTTAGGCAAGCAATAGACCATTTTCTTGAGTCTCAAATTCTGCTGAGTGGTTCTGATGATGCCTTTCATAGATATGCCCCAGATGGAGAATCTGGAATTCAAGCAAATGATTTTTCTTTTGCTGGGACTATTCTTCAAAAAGATTTGGACTTGCCTCATTCTCCCTCTGCCACAGGGAAGGGGTCCAATTATATTATGACGGAATCTGCCTATGATTCAACATCTAGAAATAATGCATCCATGGGTATTGGTGGTTCTCATAGATTTGATTCAGCTGCTGGTAAATCTTTGAAGTCAGCTCCTTTGTCACAAAAGATCAAGCAAATAGTTGGTGAGAACGATGATTTCCAAGGGGAAAACATACCTACAAATTTGTGTAAAAGTCGTGTGCCTGAGGAAGCTGATTCCACTCTGAAGAAGAAGAAGGAATTGTGGGTTAATGCATCAGGTGGAGGCCAGAGTGTTATTCCTAATAATGGTAGAAACAAAAAGGGGGACAGGGCCTGTTACACTTGTGGTTCTCCAGATCATTTAATGAGAGACTGCCCCACTGCTCTCAGTCAAAATGCTATGCTTCAAACAGGTGCCATGTTCCCTGGAGTTATGCCCGGTTTATCACCTTACTGGAATGGGACTCCATCACCGTACGGCAGGTCCTCTGTGAATATGTATGGAAACCCAGGGATGATGGCCTTCAATGCTACCATGGTTCCGGTTACACCTTTTGCCGTTCCTGCATATGTTCCATCTATGTATTGTGGTCTGCCTGTTAATGGTGGATATATGGGGATGGGAGGTTTGGCACCACCAGTAGGGACCAGTGCTGAACGGCCCTTAAGCCATCCAGAGTTTTCAGAGCTTCACGATTGTAGAAAGAAACAGAAACTTTTAAATCGCAATATGACGAGAGATGAAGATGAGGATCTGAATAAGTGGTATCGGTACAATGATGCAGAAAGGTCACATGGGCATAAACCACATATAGAAAGGGAAAAGAGTATAAGCGACTCTGAAGACAGCTCTACTCAAAGGTTAAAGAGAAAAAATCGCCATGACAAACGCTTTGATGATGACATCCACTATGGTGATGAAAGACATGAGAAGAGTTCTCGTCCCATTGTTGGAAGAGATAGGAAGCCATATCACACAGAGAGATCAAGCTTAGAAATAGATGACATGCCTTATAGCTCCAGCTGGCATAGCGAAGATAGGCATAAAAACCATCATGAAAGCTCAAAAAAACACAATGACCAAAGAGGGCAGTGCAGCAACGATTCTAGTCGCAGCCGCCATCATACCAAACACCAAAAAGATGATGAAAGAAACATAAAAAAACAGAGTGAGAAACATTACAGTCATTCACAATCTGGTTCAGAGCAAGGTTTGGCCACCCAACAAATAAAGCAGGTAAAAGAGAGAGACTCCAGGCACGGGTTGGGACATGATAGGCACAATGCAAAGTCCATGAACAACGATAATGAACATGACAGGTGGCAGATGGCCATTGGCTCAGACCACGACCACAGAGACGAGCATCCTCGTCATAAGCGGAAAAGAGTCCACTAA 2388 0.4317 MSVRFKFRSAVSFDSVDIEGRPSISVRDLRSKIVRHKNLDICHDFDLVFSDAVTGQEYVDENFQIPSGSSIIIKRIPAGSVPSAAKACIDSIKHVGSKDANLVPKIVEIDDFDDFGIDLCPVPQPSFCDSDLDIDKMNCSGSEIKPSTVPRCSKPPVIVCQKLESSDLSEASPRGSTHKVQGNAPQTKSKPKVEEQTKLEKVAHANPQAIQNVDLPSEMKCSLCNTYFKKAVMIPCCQHSFCEKCIHLVLVEKAQCPKCSSTKCRVEDLLPNLSLRQAIDHFLESQILLSGSDDAFHRYAPDGESGIQANDFSFAGTILQKDLDLPHSPSATGKGSNYIMTESAYDSTSRNNASMGIGGSHRFDSAAGKSLKSAPLSQKIKQIVGENDDFQGENIPTNLCKSRVPEEADSTLKKKKELWVNASGGGQSVIPNNGRNKKGDRACYTCGSPDHLMRDCPTALSQNAMLQTGAMFPGVMPGLSPYWNGTPSPYGRSSVNMYGNPGMMAFNATMVPVTPFAVPAYVPSMYCGLPVNGGYMGMGGLAPPVGTSAERPLSHPEFSELHDCRKKQKLLNRNMTRDEDEDLNKWYRYNDAERSHGHKPHIEREKSISDSEDSSTQRLKRKNRHDKRFDDDIHYGDERHEKSSRPIVGRDRKPYHTERSSLEIDDMPYSSSWHSEDRHKNHHESSKKHNDQRGQCSNDSSRSRHHTKHQKDDERNIKKQSEKHYSHSQSGSEQGLATQQIKQVKERDSRHGLGHDRHNAKSMNNDNEHDRWQMAIGSDHDHRDEHPRHKRKRVH* 796
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0167 795 Gene3D - 434 489 - -
Vvi4g0167 795 ProSiteProfiles DWNN domain profile. 3 77 IPR014891 GO:0008270
Vvi4g0167 795 Pfam Zinc knuckle 441 457 IPR001878 GO:0003676|GO:0008270
Vvi4g0167 795 CDD vRING-HC-C4C4_RBBP6 216 269 - -
Vvi4g0167 795 MobiDBLite consensus disorder prediction 743 785 - -
Vvi4g0167 795 MobiDBLite consensus disorder prediction 727 742 - -
Vvi4g0167 795 MobiDBLite consensus disorder prediction 670 726 - -
Vvi4g0167 795 SUPERFAMILY RING/U-box 211 284 - -
Vvi4g0167 795 MobiDBLite consensus disorder prediction 592 663 - -
Vvi4g0167 795 Pfam DWNN domain 3 77 IPR014891 GO:0008270
Vvi4g0167 795 SMART DWNN_2 3 77 IPR014891 GO:0008270
Vvi4g0167 795 ProSiteProfiles Zinc finger RING-type profile. 221 260 IPR001841 -
Vvi4g0167 795 Pfam Zinc finger, C3HC4 type (RING finger) 220 259 - -
Vvi4g0167 795 ProSiteProfiles Zinc finger CCHC-type profile. 443 457 IPR001878 GO:0003676|GO:0008270
Vvi4g0167 795 MobiDBLite consensus disorder prediction 165 196 - -
Vvi4g0167 795 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 208 288 IPR013083 -
Vvi4g0167 795 SUPERFAMILY Retrovirus zinc finger-like domains 422 461 IPR036875 GO:0003676|GO:0008270
Vvi4g0167 795 SMART ring_2 221 259 IPR001841 -
Vvi4g0167 795 Gene3D - 1 81 - -
Vvi4g0167 795 MobiDBLite consensus disorder prediction 165 190 - -
Vvi4g0167 795 PANTHER RETINOBLASTOMA-BINDING PROTEIN 6 5 790 IPR033489 GO:0006397|GO:0016567|GO:0061630
Vvi4g0167 795 ProSitePatterns Zinc finger RING-type signature. 237 246 IPR017907 -
Vvi4g0167 795 SMART c2hcfinal6 442 458 IPR001878 GO:0003676|GO:0008270
Vvi4g0167 795 MobiDBLite consensus disorder prediction 592 795 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0167 - - vvi:100252571 1642.48