Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0163 ATGGGTGAAGCTGTTGAATTCTACCACTCCAATGGCGTCTCCGGGATTAATCACAATGAATCCGGGAAAAAAATCGATGAAAATCACATGTGTTGCTGGTATGAAGAAGTCATTGACGATAATCTCAAGTGGTCCTTTGCCTTGAATAGTGTGCTGCATAAGGGTACAAGCCAGTACCAGGACATAGTTCTTTTGGACACAAAACACTTTGGAAAGGCCCTGGTGATTGATGGGAAGATGCAAAGTGCTGAAGTCGACGAGTTTATCTACCATGAATGCTTGATTCATCCAGCTCTCCTTTGCCACCCAAACCCAAAAACTATCTTCATAATGGGAGGTGGTGAAGGGTCTGCTGCGAGAGAAGCACTGAGGCATAATTCCATAGAAAAAGTGGTTATGTGTGATATCGACCAGGAGGTGGTTGATTTTTGCCGTAGATATCTCACAGTAAATCAAGAGGCATTCCGAAACAAGAAGCTCAATCTGGTTATCAATGATGCCAAGGCCGAGTTAGAAAGGAGGAACGAGAAATTCGACATCATTGTCGGAGATTTAGCAGACCCAGTTGAAGGAGGGCCTTGTTATCAACTCTATACAAAATCCTTCTATGAGCGAATCCTCAAGCCTAAGCTCAATGTCAATGGCATCTTTGTTACTCAAGCTGGACCTGCAGGCATTTTTACCCACAAGGAGGTCTTCTCATCCATATACAACACAATTAAGCAGGTCTTCAAGTATGTGGTTGCATATGCAGCTCATGTTCCGTCTTTTGCAGATACATGGGGTTGGGTGATGGCCTCAGACCAGCCATTCTGTATAAACGCTGAAGAAATAGACAAGAAAATCGACAAAAGAATAGACGGGGAATTGCTATATTTGAATGGTGCCTCCTTCATCTCCTCCACCACCATGAACAAGAGTGTTTCCTTATCGCTGTTGCATGAAACTCATATCTACACTGAAGAGGATGCGAGGTTCATTCATGGACACGGGGTGGCTTACCGCGATTGA 1011 0.4402 MGEAVEFYHSNGVSGINHNESGKKIDENHMCCWYEEVIDDNLKWSFALNSVLHKGTSQYQDIVLLDTKHFGKALVIDGKMQSAEVDEFIYHECLIHPALLCHPNPKTIFIMGGGEGSAAREALRHNSIEKVVMCDIDQEVVDFCRRYLTVNQEAFRNKKLNLVINDAKAELERRNEKFDIIVGDLADPVEGGPCYQLYTKSFYERILKPKLNVNGIFVTQAGPAGIFTHKEVFSSIYNTIKQVFKYVVAYAAHVPSFADTWGWVMASDQPFCINAEEIDKKIDKRIDGELLYLNGASFISSTTMNKSVSLSLLHETHIYTEEDARFIHGHGVAYRD* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0163 336 PANTHER THERMOSPERMINE SYNTHASE ACAULIS5 29 323 - -
Vvi4g0163 336 CDD AdoMet_MTases 112 220 - -
Vvi4g0163 336 Hamap Polyamine aminopropyltransferase [speE]. 32 314 IPR001045 GO:0003824
Vvi4g0163 336 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 30 305 IPR029063 -
Vvi4g0163 336 NCBIfam fused MFS/spermidine synthase 104 256 - -
Vvi4g0163 336 Pfam Spermidine synthase tetramerisation domain 33 84 IPR035246 -
Vvi4g0163 336 FunFam thermospermine synthase ACAULIS5 31 83 - -
Vvi4g0163 336 Gene3D Spermidine synthase, tetramerisation domain 30 83 IPR037163 -
Vvi4g0163 336 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 31 268 IPR030374 -
Vvi4g0163 336 Coils Coil 157 177 - -
Vvi4g0163 336 Gene3D Vaccinia Virus protein VP39 84 335 IPR029063 -
Vvi4g0163 336 Pfam Spermine/spermidine synthase domain 87 266 - -
Vvi4g0163 336 FunFam Polyamine aminopropyltransferase 84 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0163 Vvi-Chr4 1355611 1359742 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0163 K18787 - vvi:100242399 693.345