Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0162 ATGGCTAGTGTTTCTATGGCTATGCGACTGACTTCTGCAAGCCAGAATAGGCTGCTCCAGAGGCCAACCTCTGAAGCCTTTTTCCAGCCACTGCAAGTGAAGCCATCAAAGAAGGCTGTGGCAGTGAAGCCGAAGTCCAGGGGCAGTCGGCTTGAAGTGAAGGCTTCTCTCAAAGAGAAGGCAATCACAGGTCTGACAGCCGCCGCATTGACAGCTTCCATGGTGCTGCCTGAGGCGGCTGAAGCAGCCTCCGGCGTCTCCCCATCTCTCAAGAACTTCCTGCTCAGCATTGTGGCCGGCGGCGTCGTCCTTGGTGCAATCGTCGGAGCTGTTATCGGCGTCGCCAACTTCGATCCCGTCAAGCGAACCTGA 372 0.5672 MASVSMAMRLTSASQNRLLQRPTSEAFFQPLQVKPSKKAVAVKPKSRGSRLEVKASLKEKAITGLTAAALTASMVLPEAAEAASGVSPSLKNFLLSIVAGGVVLGAIVGAVIGVANFDPVKRT* 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0162 123 Pfam Photosystem II reaction centre X protein (PsbX) 86 122 IPR009518 GO:0009523|GO:0015979|GO:0016020
Vvi4g0162 123 PANTHER OS07G0673550 PROTEIN 2 123 - -
Vvi4g0162 123 FunFam Photosystem II psbX protein 85 123 - -
Vvi4g0162 123 Gene3D Single helix bin 85 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0162 Vvi-Chr4 1354828 1355199 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0162 - - vri:117912176 182.956