Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0158 ATGAAATCAGCAGCACTATCAGCACTTCTCTCTTCAACCCTCTCCTACGCATCACCACCGCATCTCAACCTCCTCCGTCCTGCCACCGCCGTCCTCTGCCGCTCACTTCTCCCCACCTCCACCCCCAATCCCTTCCACACTCAACTCCGTACCGCCAAAATTTCTGCGTCAATGTCTTCTTCCTTCAAGCCCGAGCAAGCTAGGGTTCCGCCTGCGATTCCACCACCCACACCTCCTCTCAGCAAATTCAAGATTGGTCTGTGCCAATTGTCTGTGACTGCGGACAAGGAGAGGAACATTGCTCATGCTCGAAAGGCGATTGAGGAGGCTGTTGAAAAGGGTGCTCAGCTTGTTCTCCTGCCCGAAATATGGAATAGTCCTTATTCAAATGATAGCTTCCCAGTTTATGCTGAGGACATTGATGCAGGTAGTGATGCATCTCCTTCAACAGCCATGCTGTCTGAAGTTTCTCATGCCCTGAAAATTACTATTGTTGGTGGCTCTATACCGGAACGCTGTGGGGATCAATTGTACAATACTTGTTGCGTCTTTGGTAGTGATGGAAAGTTGAAAGCAAAACACAGGAAGATACACCTTTTTGATATCAACATTCCTGGGAAGATAACCTTTATGGAATCAAAAACTCTTACAGCAGGAGGAAGTCCCACAATTGTAGACACAGAAGTCGGGCGTATTGGAATAGGTATCTGTTATGACATTCGGTTTTCAGAACTGGCCATGTTGTATGCAGCAAGAGGCGCTCACCTGATTTGCTATCCTGGGGCATTTAACATGACAACTGGACCATTGCATTGGGAGTTATTGCAAAGGGCAAGGGCTGCAGATAATCAGCTATATGTAGCGACTTGTTCACCTGCTCGAGATGCTGGTGCTGGTTATGTGGCTTGGGGCCACTCGACTCTTGTTGGACCATTTGGAGAAGTTTTGGCTACCACAGAACATGAGGAAGCAATAATCATATCAGAGATTGATTATTCTCTAATTGAGCTCAGGAGGACGAACCTCCCATTACTGAATCAACGGCGGGGTGATCTTTACCAATTGGTAGATGTTCAGAGGTTGGATTCTCAATAA 1095 0.4721 MKSAALSALLSSTLSYASPPHLNLLRPATAVLCRSLLPTSTPNPFHTQLRTAKISASMSSSFKPEQARVPPAIPPPTPPLSKFKIGLCQLSVTADKERNIAHARKAIEEAVEKGAQLVLLPEIWNSPYSNDSFPVYAEDIDAGSDASPSTAMLSEVSHALKITIVGGSIPERCGDQLYNTCCVFGSDGKLKAKHRKIHLFDINIPGKITFMESKTLTAGGSPTIVDTEVGRIGIGICYDIRFSELAMLYAARGAHLICYPGAFNMTTGPLHWELLQRARAADNQLYVATCSPARDAGAGYVAWGHSTLVGPFGEVLATTEHEEAIIISEIDYSLIELRRTNLPLLNQRRGDLYQLVDVQRLDSQ* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0158 364 Pfam Carbon-nitrogen hydrolase 85 336 IPR003010 GO:0006807
Vvi4g0158 364 Coils Coil 93 113 - -
Vvi4g0158 364 PANTHER NITRILASE-RELATED 61 356 - -
Vvi4g0158 364 CDD nit 84 349 IPR045254 GO:0016811
Vvi4g0158 364 SUPERFAMILY Carbon-nitrogen hydrolase 81 356 IPR036526 -
Vvi4g0158 364 Gene3D - 80 358 IPR036526 -
Vvi4g0158 364 ProSiteProfiles Carbon-nitrogen hydrolase domain profile. 83 332 IPR003010 GO:0006807
Vvi4g0158 364 FunFam Omega-amidase chloroplastic 80 358 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0158 Vvi-Chr4 1307442 1313502 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0158 K13566 - vvi:100266241 710.679