Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0157 ATGGAGAAGTACTGTCGTATGTTCAGGAAGAAGGAAATGGGCAGCGTCCAGACACTGGTTTGTGTCAAGCAGGTGAAGCAAGAGGCCTCCCACGAATGGAATGAGTACATGCCATTGCCTGGGGACATCATTAAAGGGTTTGCAATGGAGGACAAGGATGATGATGAACTGTTTGTACCAATCAATGCAAGGTCAGAATTCAGTTCGCAGCTCGGGAAAATTAGTCAACAAGTTGAGGCCATTTGGGTGAAGATTAGAAGGGGAGATAGCACTCTTAAACTAAGGGCATGTGTAGTGACTGATAAGTGTTCCAAACTGTCAAGAAGGTTTACAATTCGAGCCGCCTCTGATGAGCGTCATGTTGCTGTTCTAGGGGACCTTACCTTGGATCAATGCACTGAACTGCAGGAGATGAGCAGGAGAGTGGTGAACATGGACTACAGGGTATTCAACCAGAAGGGAGTGAATTATGATTGGAAGATGAAGGTGGGAACCTTCCTGCCACTCCCGAGATCAACGGTTGTTAGCTCCATTCTTTTCATGCCTCTAGTGGGGGAGAACAGTGTTGAAGCCACTACTGCCAGGTCCATGGCCTGGTTCTCAGCTGCAGTTTCTTCTGGGGCTCCTCTCATCTTTGTCAATATCCAAACAGAACAGATTTTAACATCGACAAACTCTGGCACCACTCTCCAAATTGTACAAGGCATAAGGCTATGGTATCTACCAGGAGTAGCAGAAGTCCCTGTTGAATTGATACCAGAACTAGGAGAAACCCGATTCGGAATGAACATCAAACGAACTGATGAGGGCTTGATCTGCGTCTTCTCAGTAACTAGAGGCTCAGCTGCAGACCGTGCCGGGCTTGGGCAGCTGTGGGAGGAGGCGAATAAAACTCGGAGTTTAGTAGTGATAGCTAGATTAGAAGGGAGGAGTCTCTTGCCTTCGACTGTCAGCTCTGCAGGCCTCATCAGCTGCTGTGATCATAGCGAAATTAAGGACACGCTCAACTCAATGATGGATCAAATGGAAAACGTACATCTCCAAGTCATGGCCTGGCCTAACCAGACATTTGCACAAGCGCCTCAAGCAACTGGGGCGGCAAAGCTTCGGCCTCCAAGCGAACCAAAACGATGCCGTTTTTTCGGACGGAGGAAAGATGGCCATATCAAAGCGACGTCCCTTCTTATGGTGAAGGAAGGCCTTGATCCAGTAACGACGTCGTTTCAATGCATTCCCATCCACGGACGGTCCAGATTCAACTGGACAGCACAGAGACTCGATGGCCAAGATCATCTGTGCTGCCACAGCGGCGAAGTCCTCTGTAACCGATCTCCATCACCGCCATCAATGGCGGCTCGAACCCTAGCCAACACTCACGCCTCGCCTCTCGCCTCTCACATTGCTCAACTCCTCTCCACAGCGTCCTCCATAACCTCGTTTCTCCAGACCCTAAACCCCCAAAACCCTACACCTAATTCCCCAACTTCCATCTCCCCTCTCTCCCAATTCGCTCCGTTTCTAAACCCTAGTCTTGTGATCCAAGTGATAAAGAGCCAAAAAAACCCTTACCATGCCCTTTTCTTCTTCAACTGGGCCTCAAACCCTAACCCTAACCCTAATAACTACTCCCATTCCCACCTCTGTTACGTTGCCATCACTGATCTTCTCATCTCTCACGGCCTCTTCTCCACAGCATCGTCACTCCTTCAATCTCATCACAGACTCTCTGATTTTGCTGCGGCTAAGTTTGTCAAAGCCTATGGCGATCGCGGTGATATTCGTGGGGCAATTCATTGGTTTCATCGCGCGAAAAAGATGGAATCGGGTCGGTGTTTGTTCTCTTATAATGCCATTTTAGGGGTTTTTGTGAAAGCGAACCGAATTATGCTAGCGAGGGCGGTTTTTGATCAAATTGTGAAGGAGGGCGTGGTTAAACCTGATGTTTCCACTTATACAACGATCATTAGAGGGTATTGTAAAATGGGCATGATTGAAAATGCGAAGAATGTGTTCGATGAAATGGGTTGCAAGCCAAATTTGGTTACTTACAATACCATGATTAATGGGTTCTGTAAAAAGGGTTTAATGGAGAGTGCAATGAAAATTGTGGATCAGATGACGGAGACTGAGGATTGTATGCCTGACACTGTGACTTATACTACTTTAATTGATGGATATTGTAAAAGAGGTGAATTGGAAGAAGCTATGAAGTATATGGAAGAGATGGTCAGTCGGAATTGTGAACCAAATGTGTTGACATACAATGCTATAATCTATGGTTTGTGTTTGAATGGAAATGTTGATGAAGCAAAAAGAATGATGACAAGGATGAGATTAAATGGTCTGAAGGATAATGTTGCTACACATACAAGTATACTGAAGGGTCTTTGTGTTGTGGGAAAGTTAGATGACGCGGCTAGACATCTCAAGGAGATGGTTGGTCTTGGAATGGAAGCCGATGCAAAAGCATATGGGGTCGTTGTAAACGAGTATTGCAAAATAGGGAAAGCAGATGACGCAATTTCACTTCTAAAGGAAATGAAGAGTAGAGGCATTAATCCAAGTGTTTCTAGTTTTAATGCAGTGTTTAGGATTCTTGTGGAGTCCGGGAAGACCGATAAAGCTGGTCTTATACTGAGGCAGATGAAACAATTGGGTTGCACTCCAAACTTCTTATCATATAGTACAGTGATAGATGGTCTTTGTAAAGCTAAAGGTAGGATGCATGAAGTCGAAGAGTTTGTTGATGACATGTGCCGAAATGGTCATCATCTTGATGCCTCCATGTATAGTTGGTTGGTTAAGGGGTATTGTGAGGATGGAAATGCAGATATGGCAATGAGGCTTTTTTGTGAAATGCTGGATATGGGTTACGTGATAAATCTTGAGAGCTTTTTGGCTTTTGTCAAGGGGTTGTCAGCAAAGGAGAAGGCATTTGAGGTTGAGAAGTTTTTTGAGGAGATGTCTAGGAGATGCCCTGGAATTGATATCCATAAATACAGAAGGATTTTAGATGAGCATTTGTGTAAAAATTTGGGGAATGGACGGAGGGAACATCAGCAAAGTATGGGAATACAAGGAGGCCAGCTAGGCTGTAATGGAACAGATGGGAGGGGTTTTGGAGGATGA 3129 0.4538 MEKYCRMFRKKEMGSVQTLVCVKQVKQEASHEWNEYMPLPGDIIKGFAMEDKDDDELFVPINARSEFSSQLGKISQQVEAIWVKIRRGDSTLKLRACVVTDKCSKLSRRFTIRAASDERHVAVLGDLTLDQCTELQEMSRRVVNMDYRVFNQKGVNYDWKMKVGTFLPLPRSTVVSSILFMPLVGENSVEATTARSMAWFSAAVSSGAPLIFVNIQTEQILTSTNSGTTLQIVQGIRLWYLPGVAEVPVELIPELGETRFGMNIKRTDEGLICVFSVTRGSAADRAGLGQLWEEANKTRSLVVIARLEGRSLLPSTVSSAGLISCCDHSEIKDTLNSMMDQMENVHLQVMAWPNQTFAQAPQATGAAKLRPPSEPKRCRFFGRRKDGHIKATSLLMVKEGLDPVTTSFQCIPIHGRSRFNWTAQRLDGQDHLCCHSGEVLCNRSPSPPSMAARTLANTHASPLASHIAQLLSTASSITSFLQTLNPQNPTPNSPTSISPLSQFAPFLNPSLVIQVIKSQKNPYHALFFFNWASNPNPNPNNYSHSHLCYVAITDLLISHGLFSTASSLLQSHHRLSDFAAAKFVKAYGDRGDIRGAIHWFHRAKKMESGRCLFSYNAILGVFVKANRIMLARAVFDQIVKEGVVKPDVSTYTTIIRGYCKMGMIENAKNVFDEMGCKPNLVTYNTMINGFCKKGLMESAMKIVDQMTETEDCMPDTVTYTTLIDGYCKRGELEEAMKYMEEMVSRNCEPNVLTYNAIIYGLCLNGNVDEAKRMMTRMRLNGLKDNVATHTSILKGLCVVGKLDDAARHLKEMVGLGMEADAKAYGVVVNEYCKIGKADDAISLLKEMKSRGINPSVSSFNAVFRILVESGKTDKAGLILRQMKQLGCTPNFLSYSTVIDGLCKAKGRMHEVEEFVDDMCRNGHHLDASMYSWLVKGYCEDGNADMAMRLFCEMLDMGYVINLESFLAFVKGLSAKEKAFEVEKFFEEMSRRCPGIDIHKYRRILDEHLCKNLGNGRREHQQSMGIQGGQLGCNGTDGRGFGG* 1043
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0157 1042 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 855 889 IPR002885 -
Vvi4g0157 1042 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 715 749 IPR002885 -
Vvi4g0157 1042 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 820 854 IPR002885 -
Vvi4g0157 1042 Pfam PPR repeat 780 813 IPR002885 -
Vvi4g0157 1042 Pfam PPR repeat 675 707 IPR002885 -
Vvi4g0157 1042 Pfam PPR repeat 921 953 IPR002885 -
Vvi4g0157 1042 Pfam PPR repeat 644 674 IPR002885 -
Vvi4g0157 1042 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 750 784 IPR002885 -
Vvi4g0157 1042 Gene3D Tetratricopeptide repeat domain 779 881 IPR011990 GO:0005515
Vvi4g0157 1042 Gene3D Tetratricopeptide repeat domain 675 778 IPR011990 GO:0005515
Vvi4g0157 1042 Gene3D Tetratricopeptide repeat domain 882 1035 IPR011990 GO:0005515
Vvi4g0157 1042 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 785 819 IPR002885 -
Vvi4g0157 1042 Pfam PPR repeat 613 643 IPR002885 -
Vvi4g0157 1042 Pfam PPR repeat 823 852 IPR002885 -
Vvi4g0157 1042 Gene3D Tetratricopeptide repeat domain 500 674 IPR011990 GO:0005515
Vvi4g0157 1042 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 647 677 IPR002885 -
Vvi4g0157 1042 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 679 709 IPR002885 -
Vvi4g0157 1042 PANTHER MITOCHONDRIAL GROUP I INTRON SPLICING FACTOR CCM1 711 1010 - -
Vvi4g0157 1042 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 926 960 IPR002885 -
Vvi4g0157 1042 SUPERFAMILY HCP-like 586 818 - -
Vvi4g0157 1042 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 611 645 IPR002885 -
Vvi4g0157 1042 Pfam PPR repeat family 854 903 IPR002885 -
Vvi4g0157 1042 Pfam PPR repeat family 714 762 IPR002885 -
Vvi4g0157 1042 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 890 925 IPR002885 -
Vvi4g0157 1042 NCBIfam pentatricopeptide repeat 613 647 IPR002885 -
Vvi4g0157 1042 NCBIfam pentatricopeptide repeat 717 751 IPR002885 -
Vvi4g0157 1042 NCBIfam pentatricopeptide repeat 930 961 IPR002885 -
Vvi4g0157 1042 NCBIfam pentatricopeptide repeat 681 716 IPR002885 -
Vvi4g0157 1042 NCBIfam pentatricopeptide repeat 823 855 IPR002885 -
Vvi4g0157 1042 NCBIfam pentatricopeptide repeat 650 674 IPR002885 -
Vvi4g0157 1042 NCBIfam pentatricopeptide repeat 753 782 IPR002885 -
Vvi4g0157 1042 NCBIfam pentatricopeptide repeat 893 926 IPR002885 -
Vvi4g0157 1042 NCBIfam pentatricopeptide repeat 858 890 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0157 692 996 Glycosyltransferase AT1G05670 25.163 4.67e-19 90.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0157 - - vvi:100254177 1266.14