Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0154 ATGGAGAGAATGCTTTATGAAGCTGCAATGGAAGGGAGTGTGGCTTCCTTGCAGCAGCTGCTTCAACAAGATAGATTGATTCTCGATAGAGTTATTGTAGATTGCATCACAGAAACTCCTCTACATGTAGCAGCAATGCTTGGGCACACAGATTTTGTGAAAGAGATATTATGCCTAAAGCCTGAACTTGCCAGAGAGCTGGATTCTCGAGGATTTTCGCCTCTTCACTTGGCTTCTGCAAAAGGGTATACTGAAGTAGTCAAAGCTTTTCTACTGGTTGACCCTGATATGTGTTTTGCTTGTGACAGATATGGGAGAAACCCTCTTCATCTTGCTGCCATGAAAGGCCGCTTTGATGTGCTGAAAGAGTTGGTTAGAGCCAGGCCCCATGCAGCTCGGGCCAGGGCGGAAAGGGGTGAGACCATATTGCATCTATGCGTGAAACAAAATCAGCTGGAGGCTCTGAAGTTTTTGGTGGAGACAATGGATGATCACAATGACTTAGTCAATACTAGGGATAACAATGGCTTCACCATCCTGCACTTAGCGGTTGCTGATAAACAGATCGAGACTGTAAACTATTTGCTCAGCAATACTAGAGTCGAAGTAAATGCTCTAAACACAAGTGGGCTCACAGCACTGGACATTTTAGTACATGGTCTCAGAGATGTGGGTGACTTGGACATTGGAGAGGCCTTTCGAGGCACTGGAGCCATGAGAGCAATGAACACTCATTTGCCCAATCATCATCCCCAAGTTCTGCAGCTAACCTCAGAAGGTGATCGCAGTATGAAAAGCAAAGGTAAAGAGCACTGGCTGACAAGGAAGCGGGATGCATTAATGGTGGTGGCCTCGCTCATTGCTACAATGGCGTTTCAAGCTGCAGTGAACCCTCCTGGAGGTGCGTGGCAAGACAACTCAACGCAGAATTCCCAGGATACACAAGCTGGAAAATCGCATGCAGCAGGGAAAGCTATCATGGCGGACAGCAACGAGGAATACTACCGTCTCTACCTCAGTTACAACACAACGGGTTTCATATCATCATTGAGCATAATCCTGATGCTTATCACCGGACTACCTTTCACACACCGCCTTTTCATGTGGATGCTGACTGTGGTTGTGTGGGTGGCCATCACATCCATGGCCCTCACTTACAGAACTGCAATGACCTTTCTCACACCAGACAGTGCAGAGGCAGCAGTGACTAATATAATAGTAGTCGGAGTTGCAGTGTGGTGTGGTGTGATGGCTCTTGTTCTAGTGGGGCACACGATTCGCTTATTGGTAGCTTCAATTAGAAAGTTGGGAAAACTTTGTTGGAGAGAAAGAAGACTGCAGTCAAGTTTAGTGTATGCAAACCACACCAACATATCATTTTGA 1383 0.4649 MERMLYEAAMEGSVASLQQLLQQDRLILDRVIVDCITETPLHVAAMLGHTDFVKEILCLKPELARELDSRGFSPLHLASAKGYTEVVKAFLLVDPDMCFACDRYGRNPLHLAAMKGRFDVLKELVRARPHAARARAERGETILHLCVKQNQLEALKFLVETMDDHNDLVNTRDNNGFTILHLAVADKQIETVNYLLSNTRVEVNALNTSGLTALDILVHGLRDVGDLDIGEAFRGTGAMRAMNTHLPNHHPQVLQLTSEGDRSMKSKGKEHWLTRKRDALMVVASLIATMAFQAAVNPPGGAWQDNSTQNSQDTQAGKSHAAGKAIMADSNEEYYRLYLSYNTTGFISSLSIILMLITGLPFTHRLFMWMLTVVVWVAITSMALTYRTAMTFLTPDSAEAAVTNIIVVGVAVWCGVMALVLVGHTIRLLVASIRKLGKLCWRERRLQSSLVYANHTNISF* 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0154 460 SUPERFAMILY Ankyrin repeat 5 217 IPR036770 -
Vvi4g0154 460 ProSiteProfiles Ankyrin repeat profile. 70 91 IPR002110 GO:0005515
Vvi4g0154 460 FunFam Ankyrin repeat family protein 3 245 - -
Vvi4g0154 460 ProSiteProfiles Ankyrin repeat region circular profile. 70 91 - -
Vvi4g0154 460 MobiDBLite consensus disorder prediction 301 318 - -
Vvi4g0154 460 ProSiteProfiles Ankyrin repeat profile. 175 208 IPR002110 GO:0005515
Vvi4g0154 460 Pfam Ankyrin repeats (3 copies) 109 204 IPR002110 GO:0005515
Vvi4g0154 460 ProSiteProfiles Ankyrin repeat profile. 104 126 IPR002110 GO:0005515
Vvi4g0154 460 MobiDBLite consensus disorder prediction 301 320 - -
Vvi4g0154 460 PANTHER HOMEOBOX PROTEIN WARIAI 14 400 - -
Vvi4g0154 460 ProSiteProfiles Ankyrin repeat region circular profile. 175 198 - -
Vvi4g0154 460 Pfam Domain of unknown function 271 391 IPR026961 -
Vvi4g0154 460 Pfam Ankyrin repeats (many copies) 39 91 IPR002110 GO:0005515
Vvi4g0154 460 Gene3D - 1 258 IPR036770 -
Vvi4g0154 460 SMART ANK_2a 138 167 IPR002110 GO:0005515
Vvi4g0154 460 SMART ANK_2a 36 65 IPR002110 GO:0005515
Vvi4g0154 460 SMART ANK_2a 70 99 IPR002110 GO:0005515
Vvi4g0154 460 SMART ANK_2a 104 133 IPR002110 GO:0005515
Vvi4g0154 460 SMART ANK_2a 175 205 IPR002110 GO:0005515
Vvi4g0154 460 ProSiteProfiles Ankyrin repeat region circular profile. 104 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0154 Vvi-Chr4 1280894 1283633 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0154 2 413 Miscellaneous Gene Families AT5G15500 28.966 3.39e-45 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0154 - - vvi:100259294 884.789