Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0153 ATGGAGGAAGAAATCAAAGAACCCATTTCAGTTAATCATGCCCTGCTTGGACATGCGGACTTTGCGAAGGAGATTCTACTTCAAAAGCCTGAACTTGCTGCAGAGTTAGATTATAGACGATCTTCTCCGCTTCACTTGGCCGCAGCAAAAGGGTACATTGAAATAGTAAAAGAATTGTTATTTGTAAACCCTGAGATGTGCCTTGCTTGTGATCGAGATGGGAGAAATCCAGTTCATCTAGCAGCCATGCGGGGTCATGTGCATGTCTTGAAAGAGTTAGTCCAAGCCAAACCTCATGCAACTTGGGCCGCCTTGCCGCGGGGTGAGACCATATTACATCTGTGTGTGAAACACAATCAATTGGAAGCTCTGAAGTTGTTGGTGGAAACTGCAGATGCTCATGAGATCATGAGTGCTAAGGACGACAATGGCTTCACAATCCTGCACCTAGCAGTTGCAGATAAACAACTTGAGACCATAAACTATCTACTTTCAAGTACATCCATTGAAGTAAATGCGGTGAACCTGAATGGATGCACAGCATCGGACATTCTGGCACAAAGTCGCAGAGATGTACAAGATATGGAAATCAGTGAGTTACTCCGACATGTTGGAGCTGCAAAGGCAAAGAACATATCTTTTTCTGCTTATGAATTTGGAAGCAGTAGGACAAGGGGCATGTCTTCAGATGCAGATGATCAAAACAGGGTGCCATGCCCTATAGGAAAGAACTGCAATGAGTTTAATAAGAAGAAAGATGACTGGTTGGACAAGCAGCAGTCTGCATTAATGGTTGTGGCATCACTGATTGCCACCATGGCCTTCCAAGCTGGTGTGAGCCCTCCTGGTGATGTATGGGGTGACAACTCAAAATATGATCCTGAAGGTAGCCCAGCACCGGCACCCAGTTCAGAGACTCCACACACTGCAGGGTTATCCATAATGGCTGATAATAACCCAGATGCACATACTTCTTTCCTTGTCACCAACACCATCAGTTTCCTTGCATCTCTCAGCATCATTCTATTGCTCATAAGCGGGTTGCCCATCAACCGTAGGCTTTTTGTGTGGATTTTGATGGTGATAATGTGGATTGCAGTCACAGCAATGACACTGACCTATCTGGTCTCCATAACAGCTCTCACACCCAACCATGAGCTGGATCACCTCTCTTGCATGATAACGGTTGTAGCATATGCTTGGACTTGCTTGGTGGCTCTTCTTCTTGTTGACCTCATTCTGAAGATGATAAAGAAGTTAATTAAATGGAGAGGACGCTCAAGCTCAATGATCATCAATGGCACCACTACTATTTGA 1317 0.4487 MEEEIKEPISVNHALLGHADFAKEILLQKPELAAELDYRRSSPLHLAAAKGYIEIVKELLFVNPEMCLACDRDGRNPVHLAAMRGHVHVLKELVQAKPHATWAALPRGETILHLCVKHNQLEALKLLVETADAHEIMSAKDDNGFTILHLAVADKQLETINYLLSSTSIEVNAVNLNGCTASDILAQSRRDVQDMEISELLRHVGAAKAKNISFSAYEFGSSRTRGMSSDADDQNRVPCPIGKNCNEFNKKKDDWLDKQQSALMVVASLIATMAFQAGVSPPGDVWGDNSKYDPEGSPAPAPSSETPHTAGLSIMADNNPDAHTSFLVTNTISFLASLSIILLLISGLPINRRLFVWILMVIMWIAVTAMTLTYLVSITALTPNHELDHLSCMITVVAYAWTCLVALLLVDLILKMIKKLIKWRGRSSSMIINGTTTI* 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0153 438 FunFam Ankyrin repeat family protein 1 213 - -
Vvi4g0153 438 PANTHER HOMEOBOX PROTEIN WARIAI 14 389 - -
Vvi4g0153 438 Pfam Ankyrin repeats (3 copies) 44 132 IPR002110 GO:0005515
Vvi4g0153 438 SMART ANK_2a 73 102 IPR002110 GO:0005515
Vvi4g0153 438 SMART ANK_2a 39 68 IPR002110 GO:0005515
Vvi4g0153 438 SMART ANK_2a 143 173 IPR002110 GO:0005515
Vvi4g0153 438 SMART ANK_2a 107 136 IPR002110 GO:0005515
Vvi4g0153 438 Pfam Ankyrin repeat 143 175 IPR002110 GO:0005515
Vvi4g0153 438 ProSiteProfiles Ankyrin repeat profile. 39 60 IPR002110 GO:0005515
Vvi4g0153 438 ProSiteProfiles Ankyrin repeat region circular profile. 39 60 - -
Vvi4g0153 438 SUPERFAMILY Ankyrin repeat 15 205 IPR036770 -
Vvi4g0153 438 ProSiteProfiles Ankyrin repeat profile. 73 95 IPR002110 GO:0005515
Vvi4g0153 438 MobiDBLite consensus disorder prediction 286 314 - -
Vvi4g0153 438 ProSiteProfiles Ankyrin repeat region circular profile. 73 95 - -
Vvi4g0153 438 Pfam Domain of unknown function 254 379 IPR026961 -
Vvi4g0153 438 Gene3D - 11 213 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0153 Vvi-Chr4 1272342 1275531 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0153 18 432 Miscellaneous Gene Families AT1G34050 27.512 1.52e-37 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0153 - - vvi:109122437 795.038