Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0152 ATGCCTGAACACCAAAACCTTGTCGTTTCGATTGGCGACAGCAGCTTCCTCAACATGCACAAACCGGAGAAACAGAGAAGCATAGAAGGGGGAGGGACAATGAGGCGGCTGAGTTTGTTGGATGATGAGAAGGAAGAAGAGAGAAAGAGGGAGAAAACAAGAGAGAAGAAGCTTTATGAAGCGGCCATGGGTGGCTCCATTGCTTCACTGCTTGAATTTCTCCATGAAGACCTTTCTTCTGCCTCTGATACGCCTCTCCACATTGCAGCTCTTCTGGGTCGCTCAGATCTCGCCAAAGAACTACTGGGTCGAAGGCCCCAGCTGGCTAAAACTCTGAATTCCCGTGGATCATCGCCTCTACTCGTTGCATGCGCAAAAGGGTACGTGGAAATAGTGAAGGAATTACTATCGTTCATCCCTGATGTGTGCTTTGTGTTGGATTCAGATGGGAGGAGCCCTCTCCATCATACTGCAATCAAGGGCAGAGCCAAGGTTCTGACAGAGTTGGTGCGAGTTAAACCGGAGGCGACTAGGGTGTTGACTGGCAGAGGAGAGACTGGGCTTCACTTGTGTGTGAAGTATAATCGTTTGGAGGCCCTGAAGGTTTTGGTAGAGTCCATGGATAGAGAAGACGGGATTATGAATTGGAAGGATGATGATGGCAACACTGTTCTGCATCTTGCAGTGGCAAAGAAGCAAATTGAGGTATGA 711 0.4895 MPEHQNLVVSIGDSSFLNMHKPEKQRSIEGGGTMRRLSLLDDEKEEERKREKTREKKLYEAAMGGSIASLLEFLHEDLSSASDTPLHIAALLGRSDLAKELLGRRPQLAKTLNSRGSSPLLVACAKGYVEIVKELLSFIPDVCFVLDSDGRSPLHHTAIKGRAKVLTELVRVKPEATRVLTGRGETGLHLCVKYNRLEALKVLVESMDREDGIMNWKDDDGNTVLHLAVAKKQIEV* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0152 236 SMART ANK_2a 115 144 IPR002110 GO:0005515
Vvi4g0152 236 SMART ANK_2a 149 178 IPR002110 GO:0005515
Vvi4g0152 236 SMART ANK_2a 183 211 IPR002110 GO:0005515
Vvi4g0152 236 SMART ANK_2a 81 110 IPR002110 GO:0005515
Vvi4g0152 236 Pfam Ankyrin repeats (many copies) 84 136 IPR002110 GO:0005515
Vvi4g0152 236 MobiDBLite consensus disorder prediction 20 55 - -
Vvi4g0152 236 SUPERFAMILY Ankyrin repeat 58 235 IPR036770 -
Vvi4g0152 236 Gene3D - 31 236 IPR036770 -
Vvi4g0152 236 PANTHER HOMEOBOX PROTEIN WARIAI 78 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0152 Vvi-Chr4 1264787 1265497 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0152 55 236 Miscellaneous Gene Families AT5G54620 35.678 1.13e-28 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0152 - - vvi:104879042 429.869