Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0150 ATGGATTTGACTAACATAGGTTTTGATCCCTCAATGCTGATGGCTCTCCAGGACATGCTAGACATGTACGAGGAGCCGGTGCCGCACGCCACATCAAGAACCTACGTGAGAGATGGGAAGGCCATGGCGGCAACCCAAGCGGACGTCAAGGAGTACCCAAATGCATACGTGTTCTTGGTGGACATGCCGGGGCTCAAGGCCTATAAAATCAAGGTCCACATTGAGGACGAGAACGTGCTGGTGGTCTACGGAGAGAGGAAGCAGGACAAGGATGAAAAGGATAAGAAAGAAATGGTGAAGTACCTGAAGATCGAGAGGAGGTTTGGTAAGTTTCTAAAGAGGTTTGTGTTGGCTAAAAATGTAGACATGGATACCATATCCGCCATCTACCAGGATGGTGTGCTGACCGTTACTGTGGAGAAGAAGTATCTGCCGGAGACCAAGCCATGCAAGAGGATTGAGGTCCGAGTTGGCAAATAA 480 0.4938 MDLTNIGFDPSMLMALQDMLDMYEEPVPHATSRTYVRDGKAMAATQADVKEYPNAYVFLVDMPGLKAYKIKVHIEDENVLVVYGERKQDKDEKDKKEMVKYLKIERRFGKFLKRFVLAKNVDMDTISAIYQDGVLTVTVEKKYLPETKPCKRIEVRVGK* 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0150 159 Pfam Hsp20/alpha crystallin family 48 155 IPR002068 -
Vvi4g0150 159 SUPERFAMILY HSP20-like chaperones 26 149 IPR008978 -
Vvi4g0150 159 Gene3D - 6 156 IPR008978 -
Vvi4g0150 159 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 38 158 IPR002068 -
Vvi4g0150 159 FunFam 17.3 kDa class II heat shock protein-like 11 157 - -
Vvi4g0150 159 PANTHER HEAT-SHOCK PROTEIN 20 FAMILY MEMBER 15 155 IPR031107 -
Vvi4g0150 159 CDD ACD_sHsps-like 48 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0150 Vvi-Chr4 1257262 1257741 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0150 K13993 - vvi:100257856 310.071