Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0149 ATGGATTGGAGGATAATGGGTTTGGATTCATCAATGCTGTCTGCCCTCCATGACATGATAGACATGTACGAGGAGCCGAAGACGCAGCAACCATCGAGAGCCTACGTGCGCGACCACAAAGCCATGAACGCGACGCAAGCAGACGTGAAAGAGTACCCAAACTCGTACGTCTTCCTGGTGGACATGCCGGGTCTGAAGCCGGACCAGATCAAGGTCCAGATCGAGGAACCCAACATGCTGGTGGTGTTTGGAGAGAGGAAGCATGAGAAGGAAAAGGACGAGAAAGAGGGCGTGAAGTTCCTGAGAATGGAGAGGCGACTTGGGAAGTTCCTCAAGACCTTTATGCTGCCGGAGAATGCAAATCCCGAAGCCATATCGGCTGTTTATCAGGACGGCGTGCTCACTGTGACTGTTGAGAAGAAGCCACTGCCAGAGCCGAAGAAAGCCAAGAGCATTGAGGTCAAAGTTGGTGGATAA 477 0.522 MDWRIMGLDSSMLSALHDMIDMYEEPKTQQPSRAYVRDHKAMNATQADVKEYPNSYVFLVDMPGLKPDQIKVQIEEPNMLVVFGERKHEKEKDEKEGVKFLRMERRLGKFLKTFMLPENANPEAISAVYQDGVLTVTVEKKPLPEPKKAKSIEVKVGG* 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0149 158 CDD ACD_sHsps-like 48 140 - -
Vvi4g0149 158 FunFam 17.3 kDa class II heat shock protein-like 11 156 - -
Vvi4g0149 158 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 38 155 IPR002068 -
Vvi4g0149 158 SUPERFAMILY HSP20-like chaperones 31 149 IPR008978 -
Vvi4g0149 158 PANTHER HEAT-SHOCK PROTEIN 20 FAMILY MEMBER 14 155 IPR031107 -
Vvi4g0149 158 Gene3D - 7 156 IPR008978 -
Vvi4g0149 158 Pfam Hsp20/alpha crystallin family 48 155 IPR002068 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0149 Vvi-Chr4 1255721 1256197 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0149 K13993 - vvi:100262906 296.204