Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0148 ATGGACTTGAGAATCATGGGCTTCGATTCTCCACTCTCAACCCTCCAACACATGCTCGACGGCGTCGATGACGCTGATAAGCCCGTCAGCGCTCCAACCCGCACCTACGTTCGCGACGCCAAGGCCATGGCTGCGACGCCGGCCGACGTCAAGGAGTACCCCAATTCCTATGTCTTCATCATCGACATGCCGGGGCTGAAGTCCGGCGACATCAAGGTGCAGGTGGAGGACGACAATGTGCTGGTGATCAGCGGAGAAAGGAAGCGGGAGGAGGAGAAGGAAGGCGCCAAGTACGTGAGAATGGAGAGGAGGGTGGGGAAGTTTATGAGGAAGTTTGTGTTGCCGGAAAATGCGAATACTGATAAGATCTCTGCGGTTTGTCAAGATGGTGTGTTGACCGTCACCGTTGAGAAGCTGCCACCGCCGGAGCCGAAGAAGCCCAAGACCATTGAGGTGAAGGTTGCTTGA 468 0.5598 MDLRIMGFDSPLSTLQHMLDGVDDADKPVSAPTRTYVRDAKAMAATPADVKEYPNSYVFIIDMPGLKSGDIKVQVEDDNVLVISGERKREEEKEGAKYVRMERRVGKFMRKFVLPENANTDKISAVCQDGVLTVTVEKLPPPEPKKPKTIEVKVA* 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0148 155 Gene3D - 6 154 IPR008978 -
Vvi4g0148 155 FunFam 17.3 kDa class II heat shock protein-like 10 154 - -
Vvi4g0148 155 Pfam Hsp20/alpha crystallin family 49 153 IPR002068 -
Vvi4g0148 155 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 39 155 IPR002068 -
Vvi4g0148 155 PANTHER HEAT-SHOCK PROTEIN 20 FAMILY MEMBER 12 153 IPR031107 -
Vvi4g0148 155 SUPERFAMILY HSP20-like chaperones 16 147 IPR008978 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0148 Vvi-Chr4 1252183 1252650 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0148 K13993 - vvi:100268056 288.5