Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0146 ATGGATTCGAGGATGATGGGCTTCGATTCTCCACTCTTCTCTGCCCTCCAACACATGCTAGACGCCACCGATGACTCCGACAAGTCCGTCAGCGCCCCCACTCGCACCTACGTCCGCGACGCCAAGGCCATGGCGGCGACGCCTGCTGACGTCAAGGAGTACCCGAATTCCTACACCTTCATCGTCGACATGCCGGGGCTGAAGTCCGGCGACATCAAGGTTCAGGTGGAGGACGACAATGTGCTGGTGATCAGCGGAGAGAGGAAGCGCGAGGAAGAGAAGGAAGGCGTCAAGTACGTGAGAATGGAGAGGAGGGTAGGCAAGTTTATGAGGAAGTTTGCGTTGCCGGAGAATGCGAATACTGATAAGATCTCCGCGGTTTGTCAAGATGGAGTACTGACCGTCACCGTTGAGAAGCTACCACCGCCGGAGCCCAAGAAGCCCAAGACCATTGAGGATGCATTGACCTTTAATGGTTTCATATTCCCCAAAACAAAATGA 501 0.5469 MDSRMMGFDSPLFSALQHMLDATDDSDKSVSAPTRTYVRDAKAMAATPADVKEYPNSYTFIVDMPGLKSGDIKVQVEDDNVLVISGERKREEEKEGVKYVRMERRVGKFMRKFALPENANTDKISAVCQDGVLTVTVEKLPPPEPKKPKTIEDALTFNGFIFPKTK* 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0146 166 SUPERFAMILY HSP20-like chaperones 15 148 IPR008978 -
Vvi4g0146 166 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 40 154 IPR002068 -
Vvi4g0146 166 PANTHER HEAT-SHOCK PROTEIN 20 FAMILY MEMBER 12 152 IPR031107 -
Vvi4g0146 166 Gene3D - 5 152 IPR008978 -
Vvi4g0146 166 FunFam 17.3 kDa class II heat shock protein-like 11 155 - -
Vvi4g0146 166 Pfam Hsp20/alpha crystallin family 50 152 IPR002068 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0146 Vvi-Chr4 1244737 1246479 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0146 K13993 - vvi:100250883 282.722