Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0145 ATGGCGGCGACGCTGGCTGACGTCAAGGAGTACCCGAATTCCTACACCTTCATCGTCGACATGCCGGGGCTGAGGTCCGGCGACATCAAGGTTCAGGTGGAGGACGGCAATGTGCTGGTGATCAGCGGAGAGAGGAAGCGAGAGGAGGAGAAGGAAGGTGCCAAGTACGTAAGAATGGAGAGGAGAGTGGGGAAGTTTATGAGGAAGTTCGTGTTGCCGGAGAATGCGAATACTGATAAGATCTCTGCTGTATGTCAAGATGGGGTGTTGACCGTCACCGTCGAGAAGCTGCCACCGCCGGAACCCAAGAAGCCCAAGACCATTGAGGTCAAAATTGCTTGA 342 0.5468 MAATLADVKEYPNSYTFIVDMPGLRSGDIKVQVEDGNVLVISGERKREEEKEGAKYVRMERRVGKFMRKFVLPENANTDKISAVCQDGVLTVTVEKLPPPEPKKPKTIEVKIA* 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0145 113 PANTHER HEAT-SHOCK PROTEIN 20 FAMILY MEMBER 1 111 IPR031107 -
Vvi4g0145 113 Gene3D - 1 112 IPR008978 -
Vvi4g0145 113 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 1 113 IPR002068 -
Vvi4g0145 113 SUPERFAMILY HSP20-like chaperones 3 105 IPR008978 -
Vvi4g0145 113 Pfam Hsp20/alpha crystallin family 7 111 IPR002068 -
Vvi4g0145 113 FunFam 17.3 kDa class II heat shock protein-like 1 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0145 Vvi-Chr4 1240042 1240383 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0145 K13993 - vvi:100268136 204.527