Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0142 ATGGATTTGAGGGTCATGGGTTTTGATTCTCCACTCTTCTCAACCCTCCAACACATGCTTGACGCCGGCGACGATTCCGACAAGTCTCTCAACGCTCCCACCCGCACCTACGTCCGGGACGCCAAGGCCATGGCGGCGACGCCGGCTGACGTCAAGGAGTACCCGAATTCCTACACCTTCATCGTCGACATGCCGGGGCTGAGGTCCGGCGACATCAAGGTTCAGGTGGAGGACGGCAATGTGCTGGTGATCAGCGGAGAGAGGAAGCGGGAGGAGGAGAAGGAAGGTTCCAAGTACGTAAGAAAGGAGAGTGTTGGGACGTCATTTGTTTTGAGTATATTTGGCTCTGTGCCAGTCAAGGGCGTCACAGAGTGGCCTCCCCAGGATTCGAACCCAAGTCCAAGACTTAAGGACGATAAGGTTGCCCTCCTGAAGGAAGGCGCCAAGTATGTGAGAACAGAGAGGAGCAAAATGGATTTGAGGATCGTGGGTTTTGATTGTCCATTCTTCTCAACTCTACAAAACATGATCGACACCGGCGACGATTCCGACAAGTCTCTCAACACTCCAACCCGCACCTATGTCCGCGACGCCAAGGCCATGGCTGCGACTCCGGCTGACGTCAAGGAATACCCGAATTCCTACGCCTTCATCATCGACATGCCGGGGCTGAAGTCCGGCGACATCAAGGTTCAGGTGGAGGACGACAATGTGCTGGTGATCAGCGGAGAGAGGAAGCGGGAGGAGGAGAAGGAAGGCGCCAAGTACGTGAGAATGGAGAGGAGGGTGGGGAAGTTTATGAGGAAGTTTGTGTTGCCAGAGAATGCGAATACTGATAAGATATCTGCCGTTTGTCAAGATGGGGTGTTGACCGTCACCGTTGAGAAGCTGCCACCGCCGGAGCCCAAGAAGCCCAAGACCGTTGAGTTTCACGTCACCAAATCTCTGAAACCCAACATGGATTTGAGAATAAGAGCCTTGGATTCGCCACCCTTCCTAACCCCCTCTGCCGAACTCGTCAGCAATCCCACTAGGACCAACGCTCGCAAGGCTAAGGCTAGGCCGCGACACCGGTGTTCGGGTCGCGACGCCCGCGGACGACTCCGTGACACCGGCGGATGTCAAGGAGTACCCGAACTTCTACACCTCCATTGTCGACATGCCGGGGATGAAGCCCGGAGACATCAAGGTTCAGGTGGAGGACGACAATGTGCTGGTGATCAGCGGAGAGAGGAAGCGCGAGGAGGAGAAGGAAGGCGCCAAGTACTACGTGAGAATGGAGGGGAGGATGGGAAAGTTTATGAGGAAGTTTGCGTTGCAGGGAATGCGCACACTCATCAGATCGATGCGAAATGTCAGGATGGGGTTTTGACCGTCACCGTGCAGAAGCTGCCGCCGCCGGGGCCCAAGAAACCCAAGATCACTGAGGTGAATATGGCTTAA 1443 0.5537 MDLRVMGFDSPLFSTLQHMLDAGDDSDKSLNAPTRTYVRDAKAMAATPADVKEYPNSYTFIVDMPGLRSGDIKVQVEDGNVLVISGERKREEEKEGSKYVRKESVGTSFVLSIFGSVPVKGVTEWPPQDSNPSPRLKDDKVALLKEGAKYVRTERSKMDLRIVGFDCPFFSTLQNMIDTGDDSDKSLNTPTRTYVRDAKAMAATPADVKEYPNSYAFIIDMPGLKSGDIKVQVEDDNVLVISGERKREEEKEGAKYVRMERRVGKFMRKFVLPENANTDKISAVCQDGVLTVTVEKLPPPEPKKPKTVEFHVTKSLKPNMDLRIRALDSPPFLTPSAELVSNPTRTNARKAKARPRHRCSGRDARGRLRDTGGCQGVPELLHLHCRHAGDEARRHQGSGGGRQCAGDQRREEARGGEGRRQVLRENGGEDGKVYEEVCVAGNAHTHQIDAKCQDGVLTVTVQKLPPPGPKKPKITEVNMA* 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0142 480 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 40 144 IPR002068 -
Vvi4g0142 480 Gene3D - 7 120 IPR008978 -
Vvi4g0142 480 Gene3D - 165 310 IPR008978 -
Vvi4g0142 480 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 197 313 IPR002068 -
Vvi4g0142 480 MobiDBLite consensus disorder prediction 391 423 - -
Vvi4g0142 480 Pfam Hsp20/alpha crystallin family 207 309 IPR002068 -
Vvi4g0142 480 Pfam Hsp20/alpha crystallin family 439 477 IPR002068 -
Vvi4g0142 480 Pfam Hsp20/alpha crystallin family 50 111 IPR002068 -
Vvi4g0142 480 PANTHER HEAT-SHOCK PROTEIN 20 FAMILY MEMBER 420 473 IPR031107 -
Vvi4g0142 480 SUPERFAMILY HSP20-like chaperones 431 474 IPR008978 -
Vvi4g0142 480 FunFam 17.3 kDa class II heat shock protein-like 168 312 - -
Vvi4g0142 480 Gene3D - 395 479 IPR008978 -
Vvi4g0142 480 MobiDBLite consensus disorder prediction 405 423 - -
Vvi4g0142 480 SUPERFAMILY HSP20-like chaperones 16 112 IPR008978 -
Vvi4g0142 480 FunFam - 395 479 - -
Vvi4g0142 480 SUPERFAMILY HSP20-like chaperones 171 305 IPR008978 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0142 Vvi-Chr4 1226754 1229871 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0142 K13993 - vvi:100854120 282.337