Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0139 ATGATGGGCCTCGATTCTCCACTCTTCTCAGCCCTCCAACACATGCTTGACGCCGCCGACGGCTCCGACAAATCAGTCAGCTCACCTACTCGCACCTACGTCCACGACGCCAAGGCTATGGCTGCTACGCTGGCGGATGTCAAAGAGTACCCGAATTCCTACGCCTTCATCATCGACATGCCGGGGCTGAAGTCCGGTGACATCAAGGTTCATGTGGGGGGCGACAATGTGCTGGTGATCAGCGGAGAGAGGAAGCGGGAGGAGGAGAGGGAAGGCGCAAAGTACGTGAGAATGGAGAGGAGGGTGGGGAAGTTTATGAGGAAGTTTGCGTTGCCGGAGAATGCGAATACTGATAAGATCTCTGCGGTTTGTCAAGATGGCGTGTTGACCGTCACCGTTGAGAAGCTGCCCCCGCCGGAGCCCAAGCAGCCCAAGACCATTGAGGTCAAAATTGCTTGA 459 0.5621 MMGLDSPLFSALQHMLDAADGSDKSVSSPTRTYVHDAKAMAATLADVKEYPNSYAFIIDMPGLKSGDIKVHVGGDNVLVISGERKREEEREGAKYVRMERRVGKFMRKFALPENANTDKISAVCQDGVLTVTVEKLPPPEPKQPKTIEVKIA* 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0139 152 SUPERFAMILY HSP20-like chaperones 15 144 IPR008978 -
Vvi4g0139 152 Gene3D - 4 151 IPR008978 -
Vvi4g0139 152 Pfam Hsp20/alpha crystallin family 46 150 IPR002068 -
Vvi4g0139 152 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 36 152 IPR002068 -
Vvi4g0139 152 FunFam 17.3 kDa class II heat shock protein-like 7 151 - -
Vvi4g0139 152 PANTHER HEAT-SHOCK PROTEIN 20 FAMILY MEMBER 8 150 IPR031107 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0139 Vvi-Chr4 1222087 1222545 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0139 K13993 - vvi:100261109 280.411