Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0138 ATGGATTTGAGAATGATTGGCCTCGACTCTCCACTCTTCTCAGCCCTCCAACACATGCTCGACGCCGCCGACGACTCCGACAAGTCCGTCAGCGCCCCCACTCGCACCTACGTCCGCGATGCTAAGGCCATGGCTGCGACGCCGGCGGACGTCAAGGAGTACCCCAATTCCTACGCCTTCATCATCGACATGCCGGGGCTGAAGTCCGGCGACATCAAGGTGCAGGTGGAGGACGACAATGTGCTGGTGATCAGCGGAGAGAGGAAGCGCGAGGAGGAGAAGGAAGGCGCCAAGTATGTAAAAATGGAGAGAAGGGTGGGGAAGTTTATGAGGAAGTTTGTGTTGCCTGAGAATGCCAATACTGACAAGATCTCCGCGATTTGTCAGGATGGGGTGTTGACCGTCACAGTGGAGAAGTTGCCTCCGCCGGAGCCCAAGAAACCCAAGACCATTGAGGTGAAGATCGCCTAA 471 0.5648 MDLRMIGLDSPLFSALQHMLDAADDSDKSVSAPTRTYVRDAKAMAATPADVKEYPNSYAFIIDMPGLKSGDIKVQVEDDNVLVISGERKREEEKEGAKYVKMERRVGKFMRKFVLPENANTDKISAICQDGVLTVTVEKLPPPEPKKPKTIEVKIA* 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0138 156 Gene3D - 8 155 IPR008978 -
Vvi4g0138 156 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 40 156 IPR002068 -
Vvi4g0138 156 PANTHER HEAT-SHOCK PROTEIN 20 FAMILY MEMBER 12 154 IPR031107 -
Vvi4g0138 156 Coils Coil 155 156 - -
Vvi4g0138 156 Pfam Hsp20/alpha crystallin family 50 154 IPR002068 -
Vvi4g0138 156 SUPERFAMILY HSP20-like chaperones 16 148 IPR008978 -
Vvi4g0138 156 FunFam 17.3 kDa class II heat shock protein-like 11 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0138 Vvi-Chr4 1219942 1220412 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0138 K13993 - vvi:100243983 281.567