Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0137 ATGGTGTCTTCGAAAACGGCGGCGACGACAGCCTCACGCGCCAAGAAGCCGAAGGAGCAGCGGCTAAGCAAAGCCGACCGGTCTTCATACTTCGCTAGAAGGGAAGCCGCGAAGGTCCTGCAGTGCGTTCTCCAAGGAGACGCTAAGCGGCGAGCCGTCGGCTCCATCAAATCGCTGGTCTATAGCCCCTCGGTGAGGAACAAGAAGGCCACCTTCGCGCTCGTCTGTCAAACTCTGAAGCATCTTTCAATTATCAAGGATGTTTTGGACTCTGCTAGGATTCTAAATGCCAAGTGGAAGAGGCAAGAGGGATTGATGTATATAATCACTTACGATATTCTATTTGGGCAGGAAATTTCATCAGTTGGTGATGCAGAGAAATTTCTACTGCTTCAGAAAGATGCTATACAGTTAGCTCTAGCACGGCTTTTGGTGCGAAAGAAGGTGAAACGTGTTGAAGACTTGATGGCTCTTTATCAAATTCCTGATGTTTCAAAACCTCGTTTTGTTCGTGTAAATACTCTGAAGTTGGATGTTGAGTCTGCCTTCCACGAGTTAGGGAAACAGAACATGGTTCAGAAAGATGATATGGTTCCTGACTTGTTAATACTCCCACCAGGTAGTGATTTGCATAATCATCCTCTGGTCAGAAATGGTAGTGTTTTCATGCAAGGGAAAGCAAGCTCAATGGTGGCGGTAGCACTTGGGCCAGAGCCTGGATGGGAGGTTCTTGATGCATGTTCAGCTCCAGGAAACAAGACCGTGCACCTTGCTGCACTTATGAATGGAAAGGGAAAGATTATAGCATGTGAACTGGATAATGAAAGGGTTAAACGTTTAGAGGACACTGTCCGACTTTCTGGGGCTGCTAACATAGAAGTTTTGCACGGGGACTTTTTAAACCTAAATCCGATGGATCCATCATACTCAAAGGTTCGTGCTATTCTCTTAGATCCTTCCTGCTCTGGATCTGGAACCACTGCCGAGAGATTAGATCATCTGCTCCCGTCATATGCTGCAGGCGATGCCACAGATGTTGCTGGCACAGAAAGGCTAAACAAGCTTGCTGCTTTTCAAAAGAAGGCTTTGGAACATGCATTATCTTTTCCAGCAGTCGAGAAAGTTGTCTACAGCACATGCTCCATCCATCAAATTGAAAATGAAGACGTAATCAAATCTGTCCTACCCCTTGCTGCATCACATGGTTTTCAACTCGCAACACCATTCCCTCAGTGGCCTCGGCGTGGCCTCCCTGTTTTTGAAGGCTCTGAACATCTGCTTCGAACCCATCCAGTTGAGGACAAAGAGGGCTTCTTCATTGCTCTGTTTGTCAGAAAGAGCATTGCCAGAAGCTTGGAACAGCCAATCAAAACCCGTAAGAACAACAAGGTGAAATCTGCCAAAAGAAATGCAACCATGAACCATAATAAATCTGTGATGCCTTTTCCTTTCACTAGACTGTCCAAATTGTTGCTACATTCTCATCTGAGATTACAGACTTACAAGAAACTAAATCTGTCTACTTGA 1527 0.4578 MVSSKTAATTASRAKKPKEQRLSKADRSSYFARREAAKVLQCVLQGDAKRRAVGSIKSLVYSPSVRNKKATFALVCQTLKHLSIIKDVLDSARILNAKWKRQEGLMYIITYDILFGQEISSVGDAEKFLLLQKDAIQLALARLLVRKKVKRVEDLMALYQIPDVSKPRFVRVNTLKLDVESAFHELGKQNMVQKDDMVPDLLILPPGSDLHNHPLVRNGSVFMQGKASSMVAVALGPEPGWEVLDACSAPGNKTVHLAALMNGKGKIIACELDNERVKRLEDTVRLSGAANIEVLHGDFLNLNPMDPSYSKVRAILLDPSCSGSGTTAERLDHLLPSYAAGDATDVAGTERLNKLAAFQKKALEHALSFPAVEKVVYSTCSIHQIENEDVIKSVLPLAASHGFQLATPFPQWPRRGLPVFEGSEHLLRTHPVEDKEGFFIALFVRKSIARSLEQPIKTRKNNKVKSAKRNATMNHNKSVMPFPFTRLSKLLLHSHLRLQTYKKLNLST* 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0137 508 FunFam Putative 28S rRNA (Cytosine-C(5))-methyltransferase 159 223 - -
Vvi4g0137 508 CDD AdoMet_MTases 243 331 - -
Vvi4g0137 508 MobiDBLite consensus disorder prediction 1 27 - -
Vvi4g0137 508 Pfam 16S rRNA methyltransferase RsmB/F 233 443 IPR001678 GO:0008168
Vvi4g0137 508 MobiDBLite consensus disorder prediction 12 27 - -
Vvi4g0137 508 Gene3D Sun protein; domain 3 160 223 - -
Vvi4g0137 508 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 158 446 IPR001678 GO:0008168
Vvi4g0137 508 Gene3D Vaccinia Virus protein VP39 224 452 IPR029063 -
Vvi4g0137 508 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 170 446 IPR029063 -
Vvi4g0137 508 PANTHER NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 47 447 IPR023267 GO:0001510
Vvi4g0137 508 FunFam Methyltransferase NSUN5, putative 224 451 - -
Vvi4g0137 508 PRINTS RNA (C5-cytosine) methyltransferase signature 244 254 IPR023267 GO:0001510
Vvi4g0137 508 PRINTS RNA (C5-cytosine) methyltransferase signature 372 388 IPR023267 GO:0001510
Vvi4g0137 508 PRINTS RNA (C5-cytosine) methyltransferase signature 428 445 IPR023267 GO:0001510
Vvi4g0137 508 PRINTS RNA (C5-cytosine) methyltransferase signature 313 325 IPR023267 GO:0001510
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0137 K15264 - vvi:100261190 978.008