Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0135 ATGATGCTGTCAAAAATTGAATCTGGTAAAAATCATGGTAGAGATTCAAATGGTGGTGAGTTATTGCATGATATCAAGGCTTTAAGCAAAGCCCTTTACATGGACCAAACCCCTTCAAAAGCTTTGATTTCCTCATCCCAAGCTCGATCCCAATCTGTAGGAAAAACCCGTTTATCAGAATCAAAGTCCAAGATCTTTGAGGAAGACTTCCTGCAGAAGGATAAGAAATCATCAACATGGAACTGGAAAAAGAGCATAAAAGCTTTGACTCATATCCGGGATCGTAAATTCAATTGTTGTTTCTTTCTCCATGTACATTCAATTGAAGGACTGCCCTCAAATTTCAATGATTATAGTTTATGTGTTCATTGGAAACGAAAGGATGAGGTGTTGCACACTTGCCCATCTCATATTTGTCAGGGAGTGGCTGAATTTGAAGAGACTATAATGCATCGATGTTCTGTTTATGGTCATCGAAGTGGAACTCACAATTCGGCGAAGTATGAGGCTAGGCATTTCTTGCTGTATGCATCTGTTGTTGGGAAACCAGGGCTTGATATGGGGAAGCACTGGGTTGATCTTACAAAGTTGCTTCCGGTTACTCTGGATGAGTTAGAGGAGGACAAAAGTTCAGGGAAGTGGTCAACAAGCTATAAGCTCTCAGGCATGGCTAAAGGGGCGACTTTAAATGTTAGTTATGGTTTTTTGATAATGAAGGATAATTCGATTGAGAGTAATAATGTGATCTTTCCTGAGCTTTTAAATTTAAATCAGAATAGGACAAGCACAGGCAATGACATGCTTCAGCAGGTTGGGAGCATCCCTAGCCATGGGTCTCGTTGCCCTTCTCTATCATTGGATGTCAAAATCCTTAATGAAGGTTTTCCAAATCCTGGGCTTGAGCTTTCTCGCTCTATAAGTTTTATATATAAGAAACTTGATGAAGGGAAGTTGGGTAATTCATTAGGGTCTGATATTTTCTCTGAAGATGTGGAGTCTTTCAAACCAAAGCCCAATTTGTTCTTTGAGTCTGCTGAAGAAATTATTGGAAGTGATTGTGATGATGCAGAGTTTGATGTCACTGAGAAGGGGATAGAATTTTCCACAAAGGAACTGTTGAAACTGGAAGATGGTGCTGCTCAACCTTATGGTGGCTCTAAAGTGGAAACTGTTCATGTGGATGAGATTATTAAGGATGAGGAGACAGACTGTGATTTGAAGAATGATTTCTATGGTAAGTGTAAAGACGGGGATGTAATGGATGATGACAACTTCAAAGAGAATAGTGCATACACCAAAGATTCATCAATGGAAGAACTTGAGTACTTTCTTGACAGCCTGTCAATTTCAGATTCAGCAGAGTTGCATTCTCCGCTGGCCATGAGTGACTTTCTTGAGCAAGAAAACTACTTGGAGGTTAAGTCGAAGTTTAAAGCAAGTAAGGCAGTAAAAAAATCGCTTAGCTTGGATGATGCGACAGAATCTGTGGCAAGTGAATTCTTAAAAATGCTGGGAATAGAGGATAGCTCATTTGGTCTGAGTGCTGATAGTGACCTTGAGTCTCCAAGAGAGTGTCTTTTGAGACAGTTTGAAAAGGATAACCTAGCTTCTGGAAACTTCATTTTTGACTCTGAAGAAACAGAAGTACAGACTCAGTTTGGCTGTGATGCTCCAACTGGGTCTGACTCTGGGAATTTTGGGACTCCAACTGGTTCTGAGTTTGGGAACTGTTGCAAAGATTTACATTTTATTTCGGTTATTCAAGCTGCTGAAGAGGAACACAAGACAATGGGTCAGCCGCTGGTAAGTAGAAGGAAAGCAAAAATGCTTGAAGACTTGGAGACTGTGGCTCTAATGCAAGAATGGGGCTTGAGTGAGAAGGTCTTTCAGAATTCTCCTCGCTATAGCTCTGGTGGATTTGGAAGTCCAATCTATCTCCCCCCTGAAGAGCCTGTCAGATTACCTCCGCTCGGCGAAGGCTTGGGGCCATTCATTCAGACGAAGGATGGAGGCTTTCTGCGTTCTATGCACCCCTCAGTTTTCCGAAATGTGAAGAATGGTGGGAGCTTGATTATGCAAGCTTCTGTTTTAGTTGTGTTACCTGCAGAAATGGGTGCTGATATTATGGAAATATTACAGCATTTGGCATCAATTGGAATTGAAAAATTCTCAATGCAGGCCAGTAAGTTAATGCCTTTGGAGGATATCACTGGGAAGACAATGCATCAAATAGCATGTGAGGCTGCATTTGCATTGGAGGTGCCTGAGAGGCATACTTCATTTGTGCATGAATCAGAGGTTGGGCAAGATACATTTGGTTTGGGAAATACTGCTGAAGAATTTTCATCTTGGCAGAATAATGATAACCTGAACTCAAGTTCAGTAGGAGGTGAGATGGTCTCAGACTATGTATCACTGGAAGATCTTGCACCTTCGGCAATGGATAAGATTGAAGTTCTCTCAATTGAAGGATTAAGAATTCATTCTGGGATGTCAGATGAGGAGGCACCTTCATGCATCAGTTCCAAGTATGTTGAGGAAATCTCTGACTTTGATGGGAAGAAGACTGTCAACTTGATTAGGACTCTTGATTTTGAAGGAGCTGTAGGATTGCATCTATTGAATGCCAGTGATATTGGCAGTGATGACAATGGACTAATGAGCCTGTCTCTAACATTGGATGAGTGGTTGAGGCTGGATTCTGGAATCATCTGTGATGAGGATCAAATTAGCGAGCATACTTCAAAGATCCTTGCAGCCCATCATGCTAAGTGCATGGATCTGGTAAATGGAAGGTTGAAAAGAGACAGAAAATGGGGCAAAGCCTCTGGTAGGAAGTGGGGTATGTTGCAGAACAACTTTACAGTTGCTCTCATGGTGCAGCTTAGAGATCCCTTTAGAAACTATGAACCAGTAGGTGCCCCAGTGCTTGCTCTAATCCAAGTGGAGAGAGTATTTTTCCCTCCAAAACCCAAAATATATAACATGGAGTCAGAACCCAGCAACAGTGGGGAAGTGGTGGATCAGCACGAGTCAGTGGTAAAGGGGGAGGTGGATGGTGAGATAAAAGAGAAGGAAGAAGACGAAGAACTCATTTCTCAGTTCAAAATCACTCAGGTCCATGTTGCAGGTGTAAATACCGAGCCTGGTAGGAAAAAGCTTTGGTGTTCTGCATCACAGCATCAATCTGGATTCCGTTGGTTGCTTGCTAATGGAATAGATAAGACTAATAAGCATGTGCTTTCAAAGTCAAAGGTTATAGTAAAAGCTTCCTCCCAAGTGAGAGCACAGGTGTGGCCTGGTGAAATCTTGTGGAGCATCTCCTGTCGTTTTAATGGCACAAGAGCTAAATGGAAGGAGTTGGCAGCACTGAATCTACATATACGAAACCCTGATGTTATCTTTCCCAGTGAAACTGTCAGATTGTGA 3429 0.4194 MMLSKIESGKNHGRDSNGGELLHDIKALSKALYMDQTPSKALISSSQARSQSVGKTRLSESKSKIFEEDFLQKDKKSSTWNWKKSIKALTHIRDRKFNCCFFLHVHSIEGLPSNFNDYSLCVHWKRKDEVLHTCPSHICQGVAEFEETIMHRCSVYGHRSGTHNSAKYEARHFLLYASVVGKPGLDMGKHWVDLTKLLPVTLDELEEDKSSGKWSTSYKLSGMAKGATLNVSYGFLIMKDNSIESNNVIFPELLNLNQNRTSTGNDMLQQVGSIPSHGSRCPSLSLDVKILNEGFPNPGLELSRSISFIYKKLDEGKLGNSLGSDIFSEDVESFKPKPNLFFESAEEIIGSDCDDAEFDVTEKGIEFSTKELLKLEDGAAQPYGGSKVETVHVDEIIKDEETDCDLKNDFYGKCKDGDVMDDDNFKENSAYTKDSSMEELEYFLDSLSISDSAELHSPLAMSDFLEQENYLEVKSKFKASKAVKKSLSLDDATESVASEFLKMLGIEDSSFGLSADSDLESPRECLLRQFEKDNLASGNFIFDSEETEVQTQFGCDAPTGSDSGNFGTPTGSEFGNCCKDLHFISVIQAAEEEHKTMGQPLVSRRKAKMLEDLETVALMQEWGLSEKVFQNSPRYSSGGFGSPIYLPPEEPVRLPPLGEGLGPFIQTKDGGFLRSMHPSVFRNVKNGGSLIMQASVLVVLPAEMGADIMEILQHLASIGIEKFSMQASKLMPLEDITGKTMHQIACEAAFALEVPERHTSFVHESEVGQDTFGLGNTAEEFSSWQNNDNLNSSSVGGEMVSDYVSLEDLAPSAMDKIEVLSIEGLRIHSGMSDEEAPSCISSKYVEEISDFDGKKTVNLIRTLDFEGAVGLHLLNASDIGSDDNGLMSLSLTLDEWLRLDSGIICDEDQISEHTSKILAAHHAKCMDLVNGRLKRDRKWGKASGRKWGMLQNNFTVALMVQLRDPFRNYEPVGAPVLALIQVERVFFPPKPKIYNMESEPSNSGEVVDQHESVVKGEVDGEIKEKEEDEELISQFKITQVHVAGVNTEPGRKKLWCSASQHQSGFRWLLANGIDKTNKHVLSKSKVIVKASSQVRAQVWPGEILWSISCRFNGTRAKWKELAALNLHIRNPDVIFPSETVRL* 1143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0135 1142 Gene3D LysM domain 1097 1141 IPR036779 -
Vvi4g0135 1142 ProSiteProfiles LysM domain profile. 1094 1142 IPR018392 -
Vvi4g0135 1142 PANTHER PROTEIN PLASTID MOVEMENT IMPAIRED 1-RELATED 1 2 1136 IPR039614 -
Vvi4g0135 1142 Pfam LysM domain 1099 1136 IPR018392 -
Vvi4g0135 1142 ProSiteProfiles C2 NT-type domain profile. 89 237 IPR019448 -
Vvi4g0135 1142 Pfam N-terminal C2 in EEIG1 and EHBP1 proteins 95 239 IPR019448 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0135 Vvi-Chr4 1204793 1208351 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0135 - - vvi:100244060 2238.38