Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0129 ATGTCGAGTACTGAACAGCCTGAGCACAGAAAACAAGAAGCAGAAGAGGAGACCACCGGAGGAGCGGCGGACGACGAGGACACTGGAGCAGAGGTTGCTCCGATCGTCAAACTTCAAGAAGTTGCCGTCACCACTGGGGAAGAAGACGAAACCGTCCTTCTCGATCTGAAATGCAAGCTTTACAGATTTGACAAGGAAGGAAACCAATGGAAAGAGAGAGGTGTTGGGACTGTGAAGCTTCTCAAACACAAGGAAACCGAAAAGGTCAGGCTTGTGATGCGCCAATCCAAGACCCTTAAGATCTGTGCCAACCATCTTGTGCTTGCTTCTACATCGGTACAAGAGCATACCGGGAATGACAAATCTTGTGTTTGGCACGCCACTGATTTCTCTGATGGAGAGTTGAAGGAAGAGCTTTTTTGCATTCGATTTGCTTCTGTTGAGAACTGCAAAACTTTCAGGGAAAAGATTGAAGAGATTGCTGAATCTCTAGAAAAGAAGGCTGAAGAGAGCGAAGAGACTAAATCTGCTACTGACCTCTTGGAGAAGTTGAATGTGGGGGAAAGCAAAGATGAAGAGGGAACCAAGGAAGCAGCCTCTGCATCTGCAGAGGTGGAAAAAGATGATAGTGCTCAGCAGGAAAAGCCAGAATCTGATAAGTAG 663 0.4691 MSSTEQPEHRKQEAEEETTGGAADDEDTGAEVAPIVKLQEVAVTTGEEDETVLLDLKCKLYRFDKEGNQWKERGVGTVKLLKHKETEKVRLVMRQSKTLKICANHLVLASTSVQEHTGNDKSCVWHATDFSDGELKEELFCIRFASVENCKTFREKIEEIAESLEKKAEESEETKSATDLLEKLNVGESKDEEGTKEAASASAEVEKDDSAQQEKPESDK* 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0129 220 PANTHER RAN BINDING PROTEIN 9 192 IPR045255 -
Vvi4g0129 220 FunFam Ran-binding protein 1 b 14 179 - -
Vvi4g0129 220 Pfam RanBP1 domain 43 160 IPR000156 GO:0046907
Vvi4g0129 220 Gene3D - 7 181 IPR011993 -
Vvi4g0129 220 Coils Coil 150 177 - -
Vvi4g0129 220 CDD RanBD_RanBP1 29 162 IPR045256 GO:0006913
Vvi4g0129 220 MobiDBLite consensus disorder prediction 1 32 - -
Vvi4g0129 220 MobiDBLite consensus disorder prediction 1 18 - -
Vvi4g0129 220 SUPERFAMILY PH domain-like 34 161 - -
Vvi4g0129 220 SMART ranbd_3 32 160 IPR000156 GO:0046907
Vvi4g0129 220 MobiDBLite consensus disorder prediction 164 220 - -
Vvi4g0129 220 ProSiteProfiles Ran binding domain type 1 profile. 31 166 IPR000156 GO:0046907
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0129 Vvi-Chr4 1167250 1170760 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0129 K15306 - vvi:100247393 382.104