Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0127 ATGGCCGATCCGTACTGGAGACGCGGTGCACCCTCAGACAGAGGCAGCATTCCAAGGTCCAGCTTTCCAGGCTACTTGCCGCTTGATCCATCTGTATCAGCAGCTCATCATTTGTGGGGCACTAACGATTTGCATGGTGCTCCTTCAGATTACCCACCAAAGGATATCTTACCAGTGCGGCCTGGGGCTCATGACTTTGATGATATTATGGGTATCAGAGTTCCCCCAAAACCTGTAATTGGTGGATTCACCGCCACAACAAACATTAAGGGCTACCCAAATCCTGTAGAAGATCCAAATTTAATAGGTCAAAGGCGAGATGTTGCACATGGTATTAGTCCAGGCATTCCAGACATTGAAAGGCCCAGTTCTTTTGGAAATGTTGAAAGCCTTCCACCCCCTGTGCAGGAATCAAATATTCTTTTTGTTGACGGGCTTCCAAAAGACTGTACCAGACGAGAAGTTGGCCAAATCAGAGTTGTTCATAAGGAGCCCAGACATAGTGGAGATAAGGCCATGGTTTTGTGCTTTGTTGAGTTTAATGATGCAAGTTGTTCTCGGACTGCTTTAGAAGCCCTTCAAGGCTACAAGTTTGATGACAAGAAACCTGATTCCCCTACCTTAAGGATCCAGTTTGCACATTTCCCGTTCCGTCTACCATCTGATCTTGGGGTTCCTCTCTCTCTCTGA 690 0.4681 MADPYWRRGAPSDRGSIPRSSFPGYLPLDPSVSAAHHLWGTNDLHGAPSDYPPKDILPVRPGAHDFDDIMGIRVPPKPVIGGFTATTNIKGYPNPVEDPNLIGQRRDVAHGISPGIPDIERPSSFGNVESLPPPVQESNILFVDGLPKDCTRREVGQIRVVHKEPRHSGDKAMVLCFVEFNDASCSRTALEALQGYKFDDKKPDSPTLRIQFAHFPFRLPSDLGVPLSL* 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0127 229 MobiDBLite consensus disorder prediction 1 21 - -
Vvi4g0127 229 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 141 202 IPR000504 GO:0003723
Vvi4g0127 229 SUPERFAMILY RNA-binding domain, RBD 110 202 IPR035979 GO:0003676
Vvi4g0127 229 Gene3D - 135 215 IPR012677 -
Vvi4g0127 229 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 139 215 IPR000504 GO:0003723
Vvi4g0127 229 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 22 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0127 Vvi-Chr4 1133825 1141602 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0127 - - vvi:100257637 474.552