Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0108 ATGGCAGAGACAAAGAGGTACATTTCAAAGGAAGAGCTCAAGACCCACAGCAGGGATGGGGATCTATGGATCTCTATACAGGGGAAGGTCTATAATGTGTCTGATTGGGCGAAAGTGCACCCAGGTGGGTCTGCTCCATTGCTGAGTCTCGCCGGCCAGGATGCTACTGACGCTTTTGTGGCCTACCATCCCGGGGTTTTGTGGAGCCGTTTGGACGATTTCTTTACTGGGTTTCATCTCGAGGACTATGCTGTTTCGGAGGCGTCGAGGGATTATAGGAGGTTGGTGTATGAGTTTACGAAGATGGGGTTGTTTGAGAAAAAGGGGCATGGGGTGTTCGTCACGCTCTGTGCGATGGCGGTGATGTTCTCCGCCTGTATTTATGGGGTTCTGGGGTCTGACAACACATGGGTTCATCTCGCCAGTGGCGCGTTGATGGGGCTTTTCTGGATTCAGAGTGGGTGGATTGGGCACGATTCTGGGCACTACCAGGTGATGATGAACAGGCGTTTGAACCGCTTTGTGCAGGTGCTGAGTGGGAATTGTCTTGCGGGGATCAGTATTGCGTGGTGGAAGTGGAATCACAACGCTCATCACATTGCCTGCAACAGCCTCGATTTCGATCCGGATCTTCAGCATATGCCTGTATTCGCGGTATCTTCCAAGCTTTTCAGTTCCCTTACATCTTATTTCTATGAAAGGAAGATGAATTTTGATTGTGTGGCTAGGTTTCTAGTGAGTTACCAGCACTGGACTTTTTATCCTGTGATGTGTGTTGCTAGATTAAATCTATTTGCTCAGTCCTGGTCTTTGTTGTTGTCCAAGAGGAGGGTTCGCTACAGGGCTCAGGAGATTTTGGGGCTGCTTGTGTTTTGGATTTGGTACCCTTTACTTGTTTCATGTCTGCCCAATTGGTGGGAAAGAGTGATGTTTGTTGTTCTGAGTTTCTCCTTTACTGGAATCCAGCATGTTCAATTCTGTTTGAATCATTTCTCATCCAGTGTTTATGTGGGTCCTCCAAGTGGGAATGATTGGTTTGAGAAGCAGACTCATGGGTCTCTCGATATTTCCTGCTCCTCTTGGATGGACTGGTTTCATGGTGGGCTGCAGTTTCAGATTGAGCACCATCTGTTTCCTCGGCTGCCTCGGAACCAGCTCAGGAACGTCTCACCCTTTGTTCAGGAGCTTTGCAAGAAGCACAATTTGCCTTATGATTGCGCGTCATTCTGGAAGGCCAATGTGTTGACACTCGCGACACTGAGGACTGCAGCCTTGCAGGCTCGCGATCTTGCCAACCCGATTCCAAAGAATTTGGTCTGGGAAGCAGTGAACACTCATGGATGA 1344 0.4896 MAETKRYISKEELKTHSRDGDLWISIQGKVYNVSDWAKVHPGGSAPLLSLAGQDATDAFVAYHPGVLWSRLDDFFTGFHLEDYAVSEASRDYRRLVYEFTKMGLFEKKGHGVFVTLCAMAVMFSACIYGVLGSDNTWVHLASGALMGLFWIQSGWIGHDSGHYQVMMNRRLNRFVQVLSGNCLAGISIAWWKWNHNAHHIACNSLDFDPDLQHMPVFAVSSKLFSSLTSYFYERKMNFDCVARFLVSYQHWTFYPVMCVARLNLFAQSWSLLLSKRRVRYRAQEILGLLVFWIWYPLLVSCLPNWWERVMFVVLSFSFTGIQHVQFCLNHFSSSVYVGPPSGNDWFEKQTHGSLDISCSSWMDWFHGGLQFQIEHHLFPRLPRNQLRNVSPFVQELCKKHNLPYDCASFWKANVLTLATLRTAALQARDLANPIPKNLVWEAVNTHG* 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0108 447 CDD Delta6-FADS-like 140 402 - -
Vvi4g0108 447 Pfam Cytochrome b5-like Heme/Steroid binding domain 9 74 IPR001199 -
Vvi4g0108 447 Gene3D - 1 77 IPR036400 -
Vvi4g0108 447 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 5 77 IPR001199 -
Vvi4g0108 447 PIRSF FA_sphingolip_des 1 433 IPR012171 GO:0016491
Vvi4g0108 447 PANTHER FATTY ACID DESATURASE 2 5 429 IPR012171 GO:0016491
Vvi4g0108 447 SMART Cyt_b5_2 8 80 IPR001199 -
Vvi4g0108 447 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 3 85 IPR036400 -
Vvi4g0108 447 Pfam Fatty acid desaturase 136 406 IPR005804 GO:0006629
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0108 Vvi-Chr4 991937 993280 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0108 5 447 Lipid Metabolism Gene Families AT2G46210 66.591 0.0 644
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0108 K21737 - vvi:100259521 938.717