Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0107 ATGGCAGAAAAACCCCAACCGGTACGGGTTCTGTACTGCTCCGTTTGTAGTCTTCCAGCAGAGTATTGCGAATTCGGACCCGATTTTGAGAAATGCAAGCCATGGTTGATCAAGAACGCGCCCGAACTCTACCCAGATCTTCTTAAAGAGGCTAGTGAAAAGGAAGCTGACAAGGTTTCTGAACAGCTACAGTCAGTTGGGATCTCTTCCGGGGCTGGCAATGAGACTGCTCCTTCTGGGAAAACGTCAACATCTAAGCAAGAGGAAGTAAAACGTCTTCCTGGTGGAAAAATAAAGAAGAAAGAGAAACAAGAGGTCATTATTGAGAAGGTTGTGCGCAATAAGCGCAAGTGTATCACAATTGTGAAAGGACTGGACCTATTTGGTGTTAAACTTGGTGATGCTTCCAAAAAGCTTGGGAAGAAGTTTGCCACCGGAGCATCTGTTGTTAAGGGCCCAACTGATAAGGAGCAAATTGATGTTCAAGGGGACATATCCTACGACATTGTAGAATTTGTAACAGATACCTGGCCTGATGTGCCTGAAACTGCCATTTACTTCATTGAAGACGGGAGAAAGGTCTCGGCTGCTTGA 594 0.4545 MAEKPQPVRVLYCSVCSLPAEYCEFGPDFEKCKPWLIKNAPELYPDLLKEASEKEADKVSEQLQSVGISSGAGNETAPSGKTSTSKQEEVKRLPGGKIKKKEKQEVIIEKVVRNKRKCITIVKGLDLFGVKLGDASKKLGKKFATGASVVKGPTDKEQIDVQGDISYDIVEFVTDTWPDVPETAIYFIEDGRKVSAA* 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0107 197 SUPERFAMILY eIF1-like 19 188 IPR036877 GO:0003743|GO:0006413
Vvi4g0107 197 FunFam Translation machinery-associated protein 22 73 183 - -
Vvi4g0107 197 PANTHER DENSITY-REGULATED PROTEIN HOMOLOG 2 194 - -
Vvi4g0107 197 MobiDBLite consensus disorder prediction 62 84 - -
Vvi4g0107 197 Pfam Translation initiation factor SUI1 103 176 IPR001950 GO:0003743|GO:0006413
Vvi4g0107 197 Gene3D - 46 183 - -
Vvi4g0107 197 NCBIfam density-regulated protein DRP1 7 187 IPR005873 GO:0003743
Vvi4g0107 197 ProSiteProfiles Translation initiation factor SUI1 family profile. 106 177 IPR001950 GO:0003743|GO:0006413
Vvi4g0107 197 MobiDBLite consensus disorder prediction 55 95 - -
Vvi4g0107 197 CDD DENR_C 104 189 IPR046447 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0107 Vvi-Chr4 982375 986690 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0107 K24272 - vvi:100264692 380.178