Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0104 ATGGCTTGGAGGCGTCTTATCACTCAGGTCTCAAGGCAGCAATCAGAGTTAGGACAATTGAAAACTTTGTTTGTTAGAAATTTTCTTCCTTCCCAAAAGTTTGGAGGGAATAGGTTTCCCAGTGCTCAAGAAAGGTTTCAATCAAGTTATGTTGGCAATTTAGCTCGCAGAGTACGTGATGCAGAAGGAGCAAGTGATGCTGCCTATCTTAAAGAGCTATATCATCGAAATGACCCAGAAGCAGTGATAAGATTATTTGAAAGTCAACCATCATTACATTCCAACCCTTCTGCTCTTGCAGAATATGTTAAAGCTTTGGTCAGAGTTGACAGGTTGGACGAAAGTGAGTTGTTCAAGACATTGCAAAGAGGTATTACTAGCTCATTTGGGGAGGGAGAAAGTACAGGTGGCCTTTCAGCTTTTAGAAATGTGGGAAAAGTGACAAAGGACAGTGTCCTCGGAACGGCTAGTGCTCCTATTCATATGGTAGCTTCAGAGGGAGGACATTTCAAAGAGCAGTTGTGGCGTACATTCCGCACTATTGCGCTGGCCTTTCTCTTGATTTCAGGTGTAGGAGCACTCATTGAGGATAGAGGAATCAGTAAAGGACTTGGTCTAAATGAAGAGGTGCAACCTAGCATGGAATCAAATACAAAATTTAATGATGTAAAGGGTGTTGATGAGGCAAAAGCTGAGCTAGAAGAAATAGTTCACTACCTTCGAGATCCTAAGCGCTTCACTCGTCTAGGTGGCAAACTTCCAAAGGGTGTTTTGCTTGTTGGTCCACCTGGCACCGGCAAGACCATGTTGGCAAGAGCTATCGCTGGAGAAGCTGAGGTGCCTTTCTTCTCATGCAGTGGCAGTGAATTTGAAGAGATGTTTGTTGGTGTTGGAGCCCGGAGGGTTCGGGATCTTTTTTCAGCTGCGAAGAAGAGGTCGCCTTGTATAATTTTCATTGATGAGATAGATGCGATTGGCGGAAGCCGTAATCCAAAGGATCAGCAGTACATGAAGATGACTTTGAATCAGTTGCTCGTTGAACTGGATGGATTCAAACAAAATGAAGGGATCATAGTGATTGCTGCAACTAACTTCCCTGAATCTTTGGACAAGGCACTGGTGAGACCTGGTCGGTTTGATCGTCACATTGTTGTCCCTAATCCAGATGTAGAAGGGCGGAGGCAGATTATGGAATCCCATATGTCAAAGGTTCTGAAGGGGGATGATGTTGATCTGATGATAATTGCTAGAGGAACTCCTGGGTTTTCAGGTGCTGATCTTGCAAACTTGGTCAATATTGCTGCTCTCAAGGCAGCAATGGACGGCGCTAAAGAGGTTACCATGGCTGATCTGGAGTATGCAAAGGACAAGATTATGATGGGAAGTGAACGCAAATCAGCGGTTATCTCTGATGAGTCACGAAGACTGACAGCTTTCCATGAAGGTGGTCATGCCCTTGTGGCTATCCATACTGATGGAGCTCTTCCAGTACATAAAGCAACAATAGTCCCACGTGGGATTATCTCCCGTAAGCAGATGCTTGCTCGGCTTGATGTCTGCATGGGTGGCCGAGTTGCAGAAGAGCTTATCTTTGGAGAGAGTGAGGTCACTTCTGGTGCATCTTCTGATCTCCAGCAAGCAACTTCCCTTGCAAGAGCAATGGTTACAAAGTTTGGTATGAGCAAAGAAGTTGGGGTTGTTACTCACAACTATGACGATAATGGAAAGAGCATGAGCACTGAGACTAGGCTCCTTATTGAAAAGGAAGTAAAGCATTTCTTGGAAAAAGCCTATAACAATGCTAAAACCATCCTCACTACTCACAGCAAGGAGCTGCATGCTCTAGCTAATGCCCTGCTTGAGCATGAGACACTTACAGGAAATCAGATAAAGGCTCTGCTTGCACAGGTCAACTCCCAGCAGCCGCATCAGCAACAACAACAGCAATTGGTTACATCACAGAGCACTTCACAGTCTAATCCAGTGCCTCCCTCAACACCCAATGCAGCCGCATCTGCTGCTGCTGCTGCAGCTGCAGCAGCAGCTGCTGCAACTGCTGCAGCCAAGGCCAAAGGCATTGCCCCTGTGGGATCTTAG 2097 0.4583 MAWRRLITQVSRQQSELGQLKTLFVRNFLPSQKFGGNRFPSAQERFQSSYVGNLARRVRDAEGASDAAYLKELYHRNDPEAVIRLFESQPSLHSNPSALAEYVKALVRVDRLDESELFKTLQRGITSSFGEGESTGGLSAFRNVGKVTKDSVLGTASAPIHMVASEGGHFKEQLWRTFRTIALAFLLISGVGALIEDRGISKGLGLNEEVQPSMESNTKFNDVKGVDEAKAELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAEVPFFSCSGSEFEEMFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKGDDVDLMIIARGTPGFSGADLANLVNIAALKAAMDGAKEVTMADLEYAKDKIMMGSERKSAVISDESRRLTAFHEGGHALVAIHTDGALPVHKATIVPRGIISRKQMLARLDVCMGGRVAEELIFGESEVTSGASSDLQQATSLARAMVTKFGMSKEVGVVTHNYDDNGKSMSTETRLLIEKEVKHFLEKAYNNAKTILTTHSKELHALANALLEHETLTGNQIKALLAQVNSQQPHQQQQQQLVTSQSTSQSNPVPPSTPNAAASAAAAAAAAAAAATAAAKAKGIAPVGS* 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0104 698 FunFam ATP-dependent zinc metalloprotease FtsH 388 462 - -
Vvi4g0104 698 FunFam ATP-dependent zinc metalloprotease FTSH 4 206 387 - -
Vvi4g0104 698 SMART AAA_5 253 389 IPR003593 GO:0016887
Vvi4g0104 698 MobiDBLite consensus disorder prediction 639 667 - -
Vvi4g0104 698 Pfam AAA+ lid domain 409 452 IPR041569 -
Vvi4g0104 698 CDD RecA-like_FtsH 218 385 - -
Vvi4g0104 698 MobiDBLite consensus disorder prediction 639 670 - -
Vvi4g0104 698 ProSitePatterns AAA-protein family signature. 357 375 IPR003960 GO:0005524|GO:0016887
Vvi4g0104 698 Hamap ATP-dependent zinc metalloprotease FtsH [ftsH]. 4 665 IPR005936 GO:0004176|GO:0004222|GO:0016020
Vvi4g0104 698 Gene3D - 205 387 IPR027417 -
Vvi4g0104 698 PANTHER METALLOPROTEASE M41 FTSH 43 645 - -
Vvi4g0104 698 Pfam ATPase family associated with various cellular activities (AAA) 257 386 IPR003959 GO:0005524|GO:0016887
Vvi4g0104 698 Pfam Peptidase family M41 468 632 IPR000642 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Vvi4g0104 698 Gene3D - 388 461 - -
Vvi4g0104 698 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 261 280 - -
Vvi4g0104 698 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 662 681 - -
Vvi4g0104 698 SUPERFAMILY FtsH protease domain-like 468 638 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Vvi4g0104 698 Gene3D Peptidase M41 462 645 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Vvi4g0104 698 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 217 470 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0104 Vvi-Chr4 961854 971341 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0104 62 634 Miscellaneous Gene Families AT5G53170 50.817 0.0 548
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0104 K08955 - vvi:100252645 1254.2