Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0102 ATGGAGATATCTGCAATTTGGGCTGTTGGGTTGTGCCTTTTTCTGGCTAGACATGGGATTGAGGCAGAGGCCTCTTATCCTAGTTGCAGAAATCTTCAATCTAATCCAACAGAGCAGCCTTACAGGACTGCCTACCACTTCCAGCCTCCGAAAAACTGGATGAATGGGCCAATGTACTACAATGGTGTTTACCATCTGTTCTATCAGTACAATCCCTATGCTGCAGTATGGGGAAACATTACATGGGCCCATTCCATATCTTATGATCTTGTCAATTGGGTTCATCTTGATCATGCTCTTAATCCAACTGATCCTTTTGACATCAATGGTTGTTGGACTGGTTCTGCTACAATACTTCCCGGAGAAGAACCTGTCATTATATACACTGGGGCAGATACTCAAAACCGACAAGTCCAAAACATGGCAGTGCCCAAGAACATATCTGATCCACTCCTTAGAGAATGGATAAAATCACCCCGTAATCCCCTAATGAGTCCTACTAACGGCATTGATGCAAACAATTTCAGAGACCCTACCACTGCTTGGCAAGGCCCAGACAAAGTATGGAGAATCATTGTTGGAAGCCTGATAAATGATCATGGTACAGCCCTTCTTTATCGAAGTAGAGATTTTGTGAACTGGACAAAGAGCCAAACCCCTCTTCATTCATCCAATAAAACTGGAATGTGGGAGTGTCCAGACTTCTACCCTGTCAGTACCAGAACTGGGGTTGAGACCTCTGTTCAAAATGCAGATACACAGCATGTGCTTAAGGCAAGCTTCAATGGGAATGACTACTACATAATAGGAAAATATGTGCCTGAAACCGATACCTATCTGGTCGAGACTGACTTCTTGGATGCTGGTTCGGATTTGAGATATGATTATGGGGAATTTTATGCTTCCAAAACATTTTTTGATGCTGCGAAAAAGCGGCGGATACTGTGGGCCTGGATACAAGAATCTGACAGTTCATCGGCTGATATTGAAAAAGGGTGGTCTGGGCTTCAGTCCATTCCTAGGAGTGTTTTGCTCGATCAAACTGGACGGCAATTAGTACAGTGGCCTATCAAAGAAATCGAGGAACTACGTGAAAACCAAGTGACCCTCTTAAATAAGGAGGTCAGGGGTGGTTCTGTACTTGAAGTTCCTGGTATTACAGCTTCACAGGTTGATGTAGAAGTTTCATTTGATTTCCCACATTTCAAAGAAGCAGAGGTCTTGGATCCCAGTTGGGTTGATCCCCAACTGCTCTGTACTCAAAAGAATGCATCTGTTAAAGGCAGCATTGGGCCATTTGGTCTGTTGGTTTTGGCCTCTAAGGATCTGACAGAACAAACTGCAATCTTCTTTCACATATTCAAAACTCATAATAAGAAATACGTTGTGCTTATGTGCAGTGATCAGAGCAGGTCATCTGTGAGGCAAGACGTTGATAAAACAAGCTATGGAGCTTTTGTTGATATAGATCCTCTTCGTGAGAAGATTTCCCTAAGAGGCTTGATAGACCATTCTATTGTTGAGAGTTTTGGTGGGGAAGGGAGGAGCTGCATAACTGCAAGGGTTTATCCAGAGTTGGCTATTAATAAAGAAGCACACTTGTATGTATTTAACAATGGAACTCAAAGTGTGAAAATCTCAAGACTTGATGCTTGGAGCATGAAGAAAGCTGAGATTGTTCCTACCAATAGAAGAAGAAACTCCCATTTCAACTAA 1716 0.4272 MEISAIWAVGLCLFLARHGIEAEASYPSCRNLQSNPTEQPYRTAYHFQPPKNWMNGPMYYNGVYHLFYQYNPYAAVWGNITWAHSISYDLVNWVHLDHALNPTDPFDINGCWTGSATILPGEEPVIIYTGADTQNRQVQNMAVPKNISDPLLREWIKSPRNPLMSPTNGIDANNFRDPTTAWQGPDKVWRIIVGSLINDHGTALLYRSRDFVNWTKSQTPLHSSNKTGMWECPDFYPVSTRTGVETSVQNADTQHVLKASFNGNDYYIIGKYVPETDTYLVETDFLDAGSDLRYDYGEFYASKTFFDAAKKRRILWAWIQESDSSSADIEKGWSGLQSIPRSVLLDQTGRQLVQWPIKEIEELRENQVTLLNKEVRGGSVLEVPGITASQVDVEVSFDFPHFKEAEVLDPSWVDPQLLCTQKNASVKGSIGPFGLLVLASKDLTEQTAIFFHIFKTHNKKYVVLMCSDQSRSSVRQDVDKTSYGAFVDIDPLREKISLRGLIDHSIVESFGGEGRSCITARVYPELAINKEAHLYVFNNGTQSVKISRLDAWSMKKAEIVPTNRRRNSHFN* 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0102 571 SMART glyco_32 46 514 IPR001362 GO:0004553|GO:0005975
Vvi4g0102 571 Pfam Glycosyl hydrolases family 32 N-terminal domain 46 356 IPR013148 -
Vvi4g0102 571 PANTHER BETA-FRUCTOFURANOSIDASE, INSOLUBLE ISOENZYME CWINV1-RELATED 33 559 - -
Vvi4g0102 571 Pfam Glycosyl hydrolases family 32 C terminal 359 553 IPR013189 -
Vvi4g0102 571 FunFam Beta-fructofuranosidase, insoluble isoenzyme CWINV1 368 554 - -
Vvi4g0102 571 SUPERFAMILY Arabinanase/levansucrase/invertase 38 357 IPR023296 -
Vvi4g0102 571 SUPERFAMILY Concanavalin A-like lectins/glucanases 356 556 IPR013320 -
Vvi4g0102 571 Gene3D - 370 554 - -
Vvi4g0102 571 FunFam Beta-fructofuranosidase, insoluble isoenzyme CWINV1 50 368 - -
Vvi4g0102 571 Gene3D Glycosyl hydrolase domain; family 43 51 369 IPR023296 -
Vvi4g0102 571 CDD GH32_Fruct1-like 52 345 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0102 Vvi-Chr4 945709 948269 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0102 58 559 Glycoside Hydrolase AT3G13790 58.755 0.0 621
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0102 - K01193 vvi:100262911 1180.62