Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0101 ATGTACTACAATGGAGTTTACCATCTGTTCTATCAGTACAATCCCTATGCTGCAGTATGGGGTAACATTACATGGGCACATTCCACATCTTATGATCTTGTCAATTGGGTTCATCTTGAACTTGCTATTAAACCAACTGACCCTTTTGACATCAATGGTTGCTGGTCTGGTTCTGCCACAATCCTTACCGGAGAAGAACCTGTCATTATATACACTGGAAAAGATTCTCAAAACCGCCAAGTCCAAAACTTGTCTGTGCCCAAGAACATATCTGACCCACTCCTTAGAGAATGGATAAAATCACCCCATAATCCTCTAATGACTCCTATTGATGGCATTGATGCAAGCAATTTCAGAGACCCTACCACTGCTTGGCAAGGCTCAGACAAAGTATGGAGAATTCTTGTTGGAAGCCTGATAAATGGTCATGGCACAGCACTTCTTTATCGAAGTAGAGACTTTGTGAACTGGAATAAGAGCCAAACCCCTCTTCATTCATCCAATAAAACTGGAATGTGGGAGTGTCCAGACTTCTACCCTGTCAGTATTAGCAGCAGAAATGGGGTTGAAACCTCTGTTCAAAATGCAGAGACACGCCATGTGCTTAAGGCAAGCTTCAATGGGAATGACTACTACATAATGGGAAAATATGTGCCTGAAACCGATACCTATCTGGTTGAGACTGGTTTCCTGGATGCGGGTTCAGATTTGAGATATGATTATGGGAAATTTTATGCATCCAAAACATTTTTTGATGCTGCGAAAAAGAGGCGGATACTGTGGGCCTGGATACAAGAAGCTGACAAAGATACTGAAAAAGGATGGTCTGGGCTTCAGTCCTTCCCTAGAAGTGTTTTGCTCGATCAAAATGGCCAACGATTAGTACAGTGGCCGGTCAAAGAAATAGCGATACTACACAAGAACCAAGTGACCTTCCACAATAAGGAGCTGAGGGGTGGTTCTGTAATTGAAGTTTCTGGTATCACAGCTTCTCAGGCTGATGTAGAAGTTTCATTTGATTTCCCACATTTGGAAGAAGCTGAGCTGATGGATCCAAGTTGGACTGATCCCCAAGCCCTCTGTAGTCGAAAGAATGTATCAGTTAAAGGCGGGATCGGGCCATTTGGCTTGTTGGTTTTGGCTTCAAACAATTTGACAGAACAAACTGCAATCTTCTTTCGCATCTTCAAAAGTACTCAAGAGAAACACATCGTGCTTATGTGCAGTGATCAGAGCAGGTCCTCTTTGAGACAAGACGTGGACAAAACCATCTATGGAGCTTTTGTTGATATAGACCTTAATCACGAGCAGATTTCGCTCAGAAGCTTGATTGACCATTCTATTGTTGAGAGTTTTGGGGGGAAGGGGAAGACTTGCATTACTGCCAGGGTTTATCCAGAGTTGGCTATTAATACAGAAGCACACCTTTATGCATTTAACAGTGGAAATCAGACTCTGAATATCTCAACACTTAGTGCTTGGAGCATGAAGAATGCTGAGATGGTTCCTACCAATTGA 1518 0.4269 MYYNGVYHLFYQYNPYAAVWGNITWAHSTSYDLVNWVHLELAIKPTDPFDINGCWSGSATILTGEEPVIIYTGKDSQNRQVQNLSVPKNISDPLLREWIKSPHNPLMTPIDGIDASNFRDPTTAWQGSDKVWRILVGSLINGHGTALLYRSRDFVNWNKSQTPLHSSNKTGMWECPDFYPVSISSRNGVETSVQNAETRHVLKASFNGNDYYIMGKYVPETDTYLVETGFLDAGSDLRYDYGKFYASKTFFDAAKKRRILWAWIQEADKDTEKGWSGLQSFPRSVLLDQNGQRLVQWPVKEIAILHKNQVTFHNKELRGGSVIEVSGITASQADVEVSFDFPHLEEAELMDPSWTDPQALCSRKNVSVKGGIGPFGLLVLASNNLTEQTAIFFRIFKSTQEKHIVLMCSDQSRSSLRQDVDKTIYGAFVDIDLNHEQISLRSLIDHSIVESFGGKGKTCITARVYPELAINTEAHLYAFNSGNQTLNISTLSAWSMKNAEMVPTN* 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0101 505 Gene3D Glycosyl hydrolase domain; family 43 1 311 IPR023296 -
Vvi4g0101 505 Pfam Glycosyl hydrolases family 32 C terminal 310 495 IPR013189 -
Vvi4g0101 505 SUPERFAMILY Concanavalin A-like lectins/glucanases 298 499 IPR013320 -
Vvi4g0101 505 Gene3D - 312 496 - -
Vvi4g0101 505 SMART glyco_32 1 456 IPR001362 GO:0004553|GO:0005975
Vvi4g0101 505 SUPERFAMILY Arabinanase/levansucrase/invertase 1 299 IPR023296 -
Vvi4g0101 505 PANTHER BETA-FRUCTOFURANOSIDASE, INSOLUBLE ISOENZYME CWINV1-RELATED 1 501 - -
Vvi4g0101 505 CDD GH32_Fruct1-like 1 287 - -
Vvi4g0101 505 FunFam Beta-fructofuranosidase, insoluble isoenzyme CWINV1 310 496 - -
Vvi4g0101 505 Pfam Glycosyl hydrolases family 32 N-terminal domain 1 298 IPR013148 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0101 Vvi-Chr4 941254 943264 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0101 1 501 Glycoside Hydrolase AT3G13790 58.560 0.0 624
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0101 - K01193 vri:117912550 1022.31