Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0083 ATGAACTCTACGGAGAGTTCTTGGAGATCGAGCCCTGTAACAATGGGTGGGAGGTTTTGTGCTTCTTTCATACCATTCTTCTCCATAATTGAAGGTCTGGTGTTCGCTGTAGCCAATTTCTGCAGTATTCACCGCACCCACCACCACAGGAATTTACGGTACGGGCTCAGAGAGCTGACGCAGCTCGCCGGTGAAACGCAATTTACTGTTAATGAAGTGGAGGCTTTGTATGAGTTGTTTAAGAAGTTAAGTAGCTCAATTATTGATGATGGCTTGATTCACAAGGAAGAGCTCCAATTAGCACTTCTCAAGTCTCCATGTGGCCAGAACCTTTTTTTAGACAGGGTATTTTATCTTTTTGATGAAAGGAAAAATGGTGCAATTGAGTTTGATGAATTTGTCCGTGCACTCAGTGTCTTCCATCCCTATGCCCCAATGGAAGACAAAATAGATTTTGCATTTAGGCTGTATGACCTGAGACAAACCGGATTTATTGAGAGAGAAGATGTTAAGCAAATGGTAATTGTCACTTTGATGGAATCGGAGATGGATCTGTCAGATGATCTTCTTGAGGCTATCATTGACAAGACATTTGTTGATGCTGATGCTGACAGGGATGGCAAAATCAGTAAAGAAGAATGGAGGGCTTTTGTACTTAGACACCCAAATCTCTTAAACAACATGAGTCTTTCTTATTTGAAGGATGTCACTACAGTATTTCCGAGTTTTGTCATCAATTCTGAGGTTGAGGACTGA 756 0.4153 MNSTESSWRSSPVTMGGRFCASFIPFFSIIEGLVFAVANFCSIHRTHHHRNLRYGLRELTQLAGETQFTVNEVEALYELFKKLSSSIIDDGLIHKEELQLALLKSPCGQNLFLDRVFYLFDERKNGAIEFDEFVRALSVFHPYAPMEDKIDFAFRLYDLRQTGFIEREDVKQMVIVTLMESEMDLSDDLLEAIIDKTFVDADADRDGKISKEEWRAFVLRHPNLLNNMSLSYLKDVTTVFPSFVINSEVED* 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0083 251 PANTHER CALCINEURIN B 51 251 IPR045198 GO:0005509|GO:0019722|GO:0019900
Vvi4g0083 251 SUPERFAMILY EF-hand 59 243 IPR011992 -
Vvi4g0083 251 ProSiteProfiles EF-hand calcium-binding domain profile. 108 143 IPR002048 GO:0005509
Vvi4g0083 251 ProSitePatterns EF-hand calcium-binding domain. 202 214 IPR018247 -
Vvi4g0083 251 ProSiteProfiles EF-hand calcium-binding domain profile. 189 224 IPR002048 GO:0005509
Vvi4g0083 251 CDD EFh 149 218 IPR002048 GO:0005509
Vvi4g0083 251 ProSiteProfiles EF-hand calcium-binding domain profile. 145 180 IPR002048 GO:0005509
Vvi4g0083 251 Gene3D - 59 251 - -
Vvi4g0083 251 Pfam EF-hand domain pair 91 136 IPR002048 GO:0005509
Vvi4g0083 251 Pfam EF-hand domain pair 148 217 IPR002048 GO:0005509
Vvi4g0083 251 SMART efh_1 112 140 IPR002048 GO:0005509
Vvi4g0083 251 SMART efh_1 193 221 IPR002048 GO:0005509
Vvi4g0083 251 SMART efh_1 149 177 IPR002048 GO:0005509
Vvi4g0083 251 FunFam calcineurin B-like protein 3 58 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0083 Vvi-Chr4 841110 846612 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0083 55 251 EF-hand Containing Proteins AT4G26570 64.677 3.98e-90 264
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0083 K06268 - vvi:100254259 474.167