Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0082 ATGAGTTCTTGGCAGGGAACGGCGAACTCTACATACAATTATTTGAGATCGAGCTCTCTCACAATAGGAGAGAAGTTATGTGCTGCTTTTATACCGTTTATAGGCATAATTGAAGCTCTGGTATTCGCTGTGGCCGGTTGCTGCGACTTCCACAAAAACAAGCATCACAAGAAACTGAGATACGGGTTCAGAGAGCTCTCGCAACTCGCCCGTGAATCGCAATTTACTGTCAATGAAGTGGAGGCACTGTATGAGTTGTTTAAGAAGTTAAGTAGCTCAATTATTGACGATGGCTTGATTCACAAGGAAGAGCTTCAATTGGCATTGTTCAAGTCTCCGCATAGTGAGAATCTTTTCCTAGACAGGGTTTTTTATCTTTTTGATGAAAAGAAAAATGGTGTGATTGAATTTGACGAATTTGTCCATGCACTCAATGTCTTCCATCCCTATGCTCCTACAGAAGACAAAATAGATTTTGCATTTAGGTTGTATGATTTGAGACAAACTGGATTTATCGAGCGCGAGGAAGTTAAGCAAATGGTTATTGCCATTTTGTTGGAATCTGATATGAATCTATCAGATGATCTTCTTGAGGCTATCATTGACAAGACATTTGCTGATGCTGATGCTGACAATGATGGTAAAATCAACAAAGAAGAATGGAAAGCTTTTGTACTTCGACACCCGAACCTCTTGAAGAACATGACTCTTCCTTATTTGAAGGACATCACCACAGTATTTCCAAGCTTTGTTTTCAATACTGAGGTTGAAGAATGA 777 0.3964 MSSWQGTANSTYNYLRSSSLTIGEKLCAAFIPFIGIIEALVFAVAGCCDFHKNKHHKKLRYGFRELSQLARESQFTVNEVEALYELFKKLSSSIIDDGLIHKEELQLALFKSPHSENLFLDRVFYLFDEKKNGVIEFDEFVHALNVFHPYAPTEDKIDFAFRLYDLRQTGFIEREEVKQMVIAILLESDMNLSDDLLEAIIDKTFADADADNDGKINKEEWKAFVLRHPNLLKNMTLPYLKDITTVFPSFVFNTEVEE* 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0082 258 CDD EFh 156 225 IPR002048 GO:0005509
Vvi4g0082 258 ProSitePatterns EF-hand calcium-binding domain. 209 221 IPR018247 -
Vvi4g0082 258 ProSiteProfiles EF-hand calcium-binding domain profile. 152 187 IPR002048 GO:0005509
Vvi4g0082 258 Gene3D - 65 258 - -
Vvi4g0082 258 PRINTS Recoverin family signature 123 144 - -
Vvi4g0082 258 PRINTS Recoverin family signature 216 236 - -
Vvi4g0082 258 PRINTS Recoverin family signature 170 188 - -
Vvi4g0082 258 PANTHER CALCINEURIN B 46 257 IPR045198 GO:0005509|GO:0019722|GO:0019900
Vvi4g0082 258 SUPERFAMILY EF-hand 66 251 IPR011992 -
Vvi4g0082 258 ProSiteProfiles EF-hand calcium-binding domain profile. 115 150 IPR002048 GO:0005509
Vvi4g0082 258 Pfam EF-hand domain pair 155 224 IPR002048 GO:0005509
Vvi4g0082 258 Pfam EF-hand domain pair 97 143 IPR002048 GO:0005509
Vvi4g0082 258 CDD EFh 120 181 IPR002048 GO:0005509
Vvi4g0082 258 ProSiteProfiles EF-hand calcium-binding domain profile. 196 231 IPR002048 GO:0005509
Vvi4g0082 258 SMART efh_1 156 184 IPR002048 GO:0005509
Vvi4g0082 258 SMART efh_1 200 228 IPR002048 GO:0005509
Vvi4g0082 258 SMART efh_1 119 147 IPR002048 GO:0005509
Vvi4g0082 258 FunFam calcineurin B-like protein 3 65 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0082 Vvi-Chr4 833320 838407 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0082 37 258 EF-hand Containing Proteins AT5G55990 63.063 1.60e-94 275
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0082 K06268 - vvi:100259377 518.85